Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF16603

Experiment: MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2245 and DORF16603 are separated by 793 nucleotidesDORF16603 and DVU2246 are separated by 89 nucleotides DVU2245: DVU2245 - mutT/nudix family protein (TIGR), at 2,340,177 to 2,340,593 DVU2245 DORF16603: DORF16603 - SEED: FIG00603945: hypothetical protein, at 2,341,387 to 2,341,623 DORF16603 DVU2246: DVU2246 - S1 RNA binding domain protein (TIGR), at 2,341,713 to 2,343,884 DVU2246 Position (kb) 2341 2342Strain fitness (log2 ratio) -2 -1 0 1at 2340.409 kb on - strand, within DVU2245at 2340.413 kb on + strand, within DVU2245at 2340.422 kb on - strand, within DVU2245at 2340.622 kb on + strandat 2340.630 kb on - strandat 2340.638 kb on + strandat 2340.670 kb on - strandat 2340.683 kb on + strandat 2340.726 kb on - strandat 2340.744 kb on + strandat 2340.744 kb on + strandat 2340.752 kb on - strandat 2340.786 kb on + strandat 2340.828 kb on + strandat 2340.839 kb on - strandat 2340.851 kb on + strandat 2340.887 kb on - strandat 2340.939 kb on - strandat 2341.003 kb on - strandat 2341.024 kb on + strandat 2341.044 kb on + strandat 2341.181 kb on - strandat 2341.257 kb on - strandat 2341.270 kb on + strandat 2341.292 kb on - strandat 2341.341 kb on + strandat 2341.349 kb on - strandat 2341.359 kb on - strandat 2341.366 kb on + strandat 2341.385 kb on + strandat 2341.385 kb on + strandat 2341.393 kb on - strandat 2341.422 kb on - strand, within DORF16603at 2341.658 kb on + strandat 2341.684 kb on + strandat 2341.705 kb on + strandat 2341.784 kb on + strandat 2341.949 kb on + strand, within DVU2246at 2342.168 kb on + strand, within DVU2246at 2342.342 kb on - strand, within DVU2246at 2342.410 kb on - strand, within DVU2246at 2342.423 kb on + strand, within DVU2246at 2342.485 kb on + strand, within DVU2246at 2342.538 kb on + strand, within DVU2246at 2342.538 kb on + strand, within DVU2246at 2342.546 kb on - strand, within DVU2246at 2342.588 kb on + strand, within DVU2246at 2342.596 kb on - strand, within DVU2246

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient
remove
2,340,409 - DVU2245 0.56 -2.7
2,340,413 + DVU2245 0.57 -2.3
2,340,422 - DVU2245 0.59 +0.2
2,340,622 + -0.7
2,340,630 - +0.0
2,340,638 + -1.3
2,340,670 - +0.6
2,340,683 + -0.9
2,340,726 - -0.1
2,340,744 + +0.3
2,340,744 + -0.1
2,340,752 - +1.1
2,340,786 + -1.9
2,340,828 + -0.2
2,340,839 - +0.3
2,340,851 + -0.6
2,340,887 - +0.3
2,340,939 - -1.2
2,341,003 - -0.1
2,341,024 + +0.1
2,341,044 + +0.2
2,341,181 - -1.0
2,341,257 - -0.2
2,341,270 + -1.2
2,341,292 - +0.2
2,341,341 + +0.4
2,341,349 - -0.7
2,341,359 - +0.2
2,341,366 + +0.7
2,341,385 + -0.2
2,341,385 + -1.0
2,341,393 - -0.3
2,341,422 - DORF16603 0.15 +0.1
2,341,658 + -0.7
2,341,684 + +1.1
2,341,705 + -0.0
2,341,784 + +0.1
2,341,949 + DVU2246 0.11 -0.9
2,342,168 + DVU2246 0.21 +0.2
2,342,342 - DVU2246 0.29 +0.1
2,342,410 - DVU2246 0.32 -0.3
2,342,423 + DVU2246 0.33 +0.5
2,342,485 + DVU2246 0.36 +0.9
2,342,538 + DVU2246 0.38 +0.2
2,342,538 + DVU2246 0.38 -0.6
2,342,546 - DVU2246 0.38 -0.3
2,342,588 + DVU2246 0.40 +0.5
2,342,596 - DVU2246 0.41 +1.5

Or see this region's nucleotide sequence