Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0324 and Rv0325 are separated by 6 nucleotides Rv0325 and Rv0326 are separated by 9 nucleotides Rv0326 and Rv0327c overlap by 33 nucleotides Rv0327c and Rv0328 are separated by 65 nucleotides Rv0328 and Rv0329c overlap by 20 nucleotides
Rv0324: Rv0324 - Possible transcriptional regulatory protein (possibly ArsR-family), at 391,352 to 392,032
Rv0324
Rv0325: Rv0325 - Hypothetical protein, at 392,039 to 392,263
Rv0325
Rv0326: Rv0326 - Hypothetical protein, at 392,273 to 392,728
Rv0326
Rv0327c: Rv0327c - Possible cytochrome P450 135A1 Cyp135A1, at 392,696 to 394,045
Rv0327c
Rv0328: Rv0328 - Possible transcriptional regulatory protein (possibly TetR/AcrR-family), at 394,111 to 394,713
Rv0328
Rv0329c: Rv0329c - Conserved hypothetical protein, at 394,694 to 395,320
Rv0329c
Position (kb) 392
393
394
395 Strain fitness (log2 ratio) -1
0
1 at 391.795 kb on + strand, within Rv0324 at 391.796 kb on - strand, within Rv0324 at 391.877 kb on + strand, within Rv0324 at 391.892 kb on + strand, within Rv0324 at 392.058 kb on + strand at 392.059 kb on - strand at 392.059 kb on - strand at 392.141 kb on + strand, within Rv0325 at 392.141 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.171 kb on + strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.250 kb on - strand at 393.182 kb on + strand, within Rv0327c at 393.771 kb on - strand, within Rv0327c at 393.877 kb on - strand, within Rv0327c at 393.898 kb on - strand, within Rv0327c at 393.898 kb on - strand, within Rv0327c at 393.976 kb on - strand at 393.976 kb on - strand at 394.421 kb on - strand, within Rv0328 at 394.421 kb on - strand, within Rv0328 at 394.550 kb on + strand, within Rv0328 at 394.551 kb on - strand, within Rv0328
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 391,795 + Rv0324 0.65 +0.2 391,796 - Rv0324 0.65 -0.1 391,877 + Rv0324 0.77 -0.2 391,892 + Rv0324 0.79 +0.9 392,058 + -0.1 392,059 - -0.9 392,059 - +0.1 392,141 + Rv0325 0.45 +0.0 392,141 + Rv0325 0.45 -0.2 392,169 + Rv0325 0.58 -1.1 392,169 + Rv0325 0.58 -0.2 392,170 - Rv0325 0.58 -0.3 392,170 - Rv0325 0.58 -0.2 392,170 - Rv0325 0.58 +0.2 392,170 - Rv0325 0.58 +0.3 392,171 + Rv0325 0.59 -1.0 392,172 - Rv0325 0.59 -0.2 392,172 - Rv0325 0.59 -0.1 392,172 - Rv0325 0.59 -0.1 392,172 - Rv0325 0.59 -0.2 392,250 - +0.4 393,182 + Rv0327c 0.36 +0.4 393,771 - Rv0327c 0.80 -0.2 393,877 - Rv0327c 0.87 +0.1 393,898 - Rv0327c 0.89 +1.0 393,898 - Rv0327c 0.89 -0.4 393,976 - -0.1 393,976 - -0.0 394,421 - Rv0328 0.51 +0.4 394,421 - Rv0328 0.51 -0.0 394,550 + Rv0328 0.73 -1.5 394,551 - Rv0328 0.73 +0.4
Or see this region's nucleotide sequence