Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0197 and Rv0198c overlap by 4 nucleotides Rv0198c and Rv0199 are separated by 42 nucleotides Rv0199 and Rv0200 overlap by 4 nucleotides
Rv0197: Rv0197 - Possible oxidoreductase, at 232,231 to 234,519
Rv0197
Rv0198c: Rv0198c - Probable zinc metalloprotease Zmp1, at 234,516 to 236,507
Rv0198c
Rv0199: Rv0199 - Probable conserved membrane protein, at 236,550 to 237,209
Rv0199
Rv0200: Rv0200 - Possible conserved transmembrane protein, at 237,206 to 237,895
Rv0200
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -1
0
1 at 233.643 kb on - strand, within Rv0197 at 233.701 kb on + strand, within Rv0197 at 233.762 kb on - strand, within Rv0197 at 233.770 kb on + strand, within Rv0197 at 234.110 kb on - strand, within Rv0197 at 234.326 kb on - strand at 234.589 kb on + strand at 234.590 kb on - strand at 234.991 kb on + strand, within Rv0198c at 235.145 kb on - strand, within Rv0198c at 235.145 kb on - strand, within Rv0198c at 235.212 kb on + strand, within Rv0198c at 235.213 kb on - strand, within Rv0198c at 235.259 kb on - strand, within Rv0198c at 235.473 kb on + strand, within Rv0198c at 235.473 kb on + strand, within Rv0198c at 235.477 kb on + strand, within Rv0198c at 235.477 kb on + strand, within Rv0198c at 235.989 kb on + strand, within Rv0198c at 236.021 kb on - strand, within Rv0198c at 236.068 kb on + strand, within Rv0198c at 236.069 kb on - strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.394 kb on + strand at 236.394 kb on + strand at 236.674 kb on - strand, within Rv0199 at 236.693 kb on - strand, within Rv0199 at 236.772 kb on - strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.988 kb on - strand, within Rv0199
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 233,643 - Rv0197 0.62 +0.0 233,701 + Rv0197 0.64 +0.6 233,762 - Rv0197 0.67 -0.4 233,770 + Rv0197 0.67 -0.3 234,110 - Rv0197 0.82 -0.1 234,326 - -0.0 234,589 + +0.5 234,590 - -0.1 234,991 + Rv0198c 0.24 +0.4 235,145 - Rv0198c 0.32 +1.0 235,145 - Rv0198c 0.32 -0.3 235,212 + Rv0198c 0.35 -0.8 235,213 - Rv0198c 0.35 -0.3 235,259 - Rv0198c 0.37 -0.1 235,473 + Rv0198c 0.48 -0.1 235,473 + Rv0198c 0.48 -0.1 235,477 + Rv0198c 0.48 +0.7 235,477 + Rv0198c 0.48 -0.0 235,989 + Rv0198c 0.74 +0.3 236,021 - Rv0198c 0.76 -0.1 236,068 + Rv0198c 0.78 +1.1 236,069 - Rv0198c 0.78 -0.2 236,101 + Rv0198c 0.80 +0.0 236,101 + Rv0198c 0.80 +0.1 236,101 + Rv0198c 0.80 +0.6 236,394 + +0.2 236,394 + -0.2 236,674 - Rv0199 0.19 +0.2 236,693 - Rv0199 0.22 -0.4 236,772 - Rv0199 0.34 -0.8 236,775 + Rv0199 0.34 -0.1 236,775 + Rv0199 0.34 +0.4 236,988 - Rv0199 0.66 +0.4
Or see this region's nucleotide sequence