Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2365c

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2363 and Rv2364c overlap by 4 nucleotidesRv2364c and Rv2365c are separated by 73 nucleotidesRv2365c and Rv2366c overlap by 29 nucleotides Rv2363: Rv2363 - Probable amidase AmiA2 (aminohydrolase), at 2,644,320 to 2,645,774 Rv2363 Rv2364c: Rv2364c - Probable GTP-binding protein Era, at 2,645,771 to 2,646,673 Rv2364c Rv2365c: Rv2365c - Conserved hypothetical protein, at 2,646,747 to 2,647,088 Rv2365c Rv2366c: Rv2366c - Probable conserved transmembrane protein, at 2,647,060 to 2,648,367 Rv2366c Position (kb) 2646 2647 2648Strain fitness (log2 ratio) -1 0 1at 2646.953 kb on - strand, within Rv2365cat 2647.054 kb on - strandat 2647.287 kb on - strand, within Rv2366c

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,646,953 - Rv2365c 0.60 +0.2
2,647,054 - -0.5
2,647,287 - Rv2366c 0.17 -0.7

Or see this region's nucleotide sequence