Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0256c and Rv0257 are separated by 151 nucleotides Rv0257 and Rv0258c are separated by 220 nucleotides Rv0258c and Rv0259c are separated by 24 nucleotides Rv0259c and Rv0260c overlap by 4 nucleotides
Rv0256c: Rv0256c - PPE family protein PPE2, at 307,877 to 309,547
Rv0256c
Rv0257: Rv0257 - Conserved hypothetical protein, at 309,699 to 310,073
Rv0257
Rv0258c: Rv0258c - Conserved hypothetical protein, at 310,294 to 310,749
Rv0258c
Rv0259c: Rv0259c - Conserved hypothetical protein, at 310,774 to 311,517
Rv0259c
Rv0260c: Rv0260c - Possible transcriptional regulatory protein, at 311,514 to 312,659
Rv0260c
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1 at 309.331 kb on + strand, within Rv0256c at 309.331 kb on + strand, within Rv0256c at 309.332 kb on - strand, within Rv0256c at 309.332 kb on - strand, within Rv0256c at 309.345 kb on + strand, within Rv0256c at 309.345 kb on + strand, within Rv0256c at 309.495 kb on - strand at 309.598 kb on - strand at 309.631 kb on - strand at 309.631 kb on - strand at 309.763 kb on + strand, within Rv0257 at 309.763 kb on + strand, within Rv0257 at 309.763 kb on + strand, within Rv0257 at 309.764 kb on - strand, within Rv0257 at 309.849 kb on - strand, within Rv0257 at 310.237 kb on - strand at 310.237 kb on - strand at 310.284 kb on - strand at 310.400 kb on + strand, within Rv0258c at 311.517 kb on + strand at 311.704 kb on - strand, within Rv0260c
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 309,331 + Rv0256c 0.87 -0.4 309,331 + Rv0256c 0.87 +0.4 309,332 - Rv0256c 0.87 -0.0 309,332 - Rv0256c 0.87 +0.6 309,345 + Rv0256c 0.88 +0.7 309,345 + Rv0256c 0.88 -0.2 309,495 - -1.1 309,598 - -0.3 309,631 - -0.6 309,631 - -0.5 309,763 + Rv0257 0.17 +0.5 309,763 + Rv0257 0.17 -0.2 309,763 + Rv0257 0.17 +0.3 309,764 - Rv0257 0.17 +1.7 309,849 - Rv0257 0.40 -0.2 310,237 - -0.4 310,237 - -1.2 310,284 - -0.5 310,400 + Rv0258c 0.23 +0.1 311,517 + -0.1 311,704 - Rv0260c 0.17 -0.1
Or see this region's nucleotide sequence