Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1157

Experiment: MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1156 and DVU1157 overlap by 4 nucleotidesDVU1157 and DVU1158 are separated by 255 nucleotidesDVU1158 and DVU1159 are separated by 182 nucleotides DVU1156: DVU1156 - sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR), at 1,247,371 to 1,248,810 DVU1156 DVU1157: DVU1157 - sensory box histidine kinase (TIGR), at 1,248,807 to 1,252,064 DVU1157 DVU1158: DVU1158 - hypothetical protein (TIGR), at 1,252,320 to 1,252,634 DVU1158 DVU1159: DVU1159 - hypothetical protein (TIGR), at 1,252,817 to 1,252,963 DVU1159 Position (kb) 1248 1249 1250 1251 1252 1253Strain fitness (log2 ratio) -2 -1 0 1 2at 1247.863 kb on + strand, within DVU1156at 1247.893 kb on - strand, within DVU1156at 1247.900 kb on - strand, within DVU1156at 1248.014 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.251 kb on + strand, within DVU1156at 1248.276 kb on - strand, within DVU1156at 1248.442 kb on + strand, within DVU1156at 1248.488 kb on + strand, within DVU1156at 1248.501 kb on - strand, within DVU1156at 1248.503 kb on - strand, within DVU1156at 1248.600 kb on + strand, within DVU1156at 1248.608 kb on - strand, within DVU1156at 1248.608 kb on - strand, within DVU1156at 1248.806 kb on - strandat 1248.982 kb on + strandat 1249.275 kb on - strand, within DVU1157at 1249.277 kb on + strand, within DVU1157at 1249.310 kb on + strand, within DVU1157at 1249.474 kb on - strand, within DVU1157at 1249.611 kb on + strand, within DVU1157at 1249.789 kb on + strand, within DVU1157at 1249.791 kb on + strand, within DVU1157at 1249.891 kb on + strand, within DVU1157at 1249.912 kb on + strand, within DVU1157at 1249.920 kb on + strand, within DVU1157at 1249.928 kb on - strand, within DVU1157at 1250.029 kb on - strand, within DVU1157at 1250.095 kb on + strand, within DVU1157at 1250.280 kb on + strand, within DVU1157at 1250.413 kb on + strand, within DVU1157at 1250.464 kb on + strand, within DVU1157at 1250.530 kb on - strand, within DVU1157at 1250.530 kb on - strand, within DVU1157at 1250.557 kb on - strand, within DVU1157at 1250.576 kb on + strand, within DVU1157at 1250.593 kb on + strand, within DVU1157at 1250.601 kb on - strand, within DVU1157at 1250.601 kb on - strand, within DVU1157at 1250.620 kb on + strand, within DVU1157at 1250.626 kb on - strand, within DVU1157at 1250.632 kb on + strand, within DVU1157at 1250.673 kb on + strand, within DVU1157at 1250.749 kb on + strand, within DVU1157at 1250.755 kb on + strand, within DVU1157at 1250.763 kb on - strand, within DVU1157at 1250.795 kb on + strand, within DVU1157at 1250.831 kb on + strand, within DVU1157at 1250.973 kb on - strand, within DVU1157at 1251.030 kb on - strand, within DVU1157at 1251.207 kb on + strand, within DVU1157at 1251.233 kb on - strand, within DVU1157at 1251.285 kb on - strand, within DVU1157at 1251.324 kb on - strand, within DVU1157at 1251.365 kb on + strand, within DVU1157at 1251.385 kb on + strand, within DVU1157at 1251.408 kb on + strand, within DVU1157at 1251.466 kb on + strand, within DVU1157at 1251.484 kb on - strand, within DVU1157at 1251.484 kb on - strand, within DVU1157at 1251.508 kb on + strand, within DVU1157at 1251.528 kb on + strand, within DVU1157at 1251.534 kb on + strand, within DVU1157at 1251.598 kb on - strand, within DVU1157at 1251.662 kb on - strand, within DVU1157at 1251.671 kb on - strand, within DVU1157at 1251.672 kb on - strand, within DVU1157at 1251.768 kb on - strandat 1251.812 kb on + strandat 1251.847 kb on + strandat 1251.885 kb on + strandat 1251.912 kb on - strandat 1251.974 kb on - strandat 1252.056 kb on + strandat 1252.074 kb on - strandat 1252.124 kb on + strandat 1252.176 kb on + strandat 1252.230 kb on - strandat 1252.254 kb on - strandat 1252.483 kb on - strand, within DVU1158at 1252.553 kb on + strand, within DVU1158at 1252.632 kb on - strandat 1252.757 kb on + strandat 1252.774 kb on - strandat 1252.830 kb on + strandat 1252.870 kb on - strand, within DVU1159at 1253.002 kb on + strandat 1253.045 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient
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1,247,863 + DVU1156 0.34 -0.2
1,247,893 - DVU1156 0.36 +0.1
1,247,900 - DVU1156 0.37 -0.0
1,248,014 + DVU1156 0.45 +1.7
1,248,125 + DVU1156 0.52 -0.8
1,248,125 + DVU1156 0.52 +0.0
1,248,125 + DVU1156 0.52 -1.2
1,248,125 + DVU1156 0.52 -0.1
1,248,125 + DVU1156 0.52 -0.4
1,248,125 + DVU1156 0.52 -0.5
1,248,133 - DVU1156 0.53 -0.1
1,248,133 - DVU1156 0.53 +0.2
1,248,133 - DVU1156 0.53 +0.2
1,248,133 - DVU1156 0.53 -0.0
1,248,133 - DVU1156 0.53 -0.8
1,248,133 - DVU1156 0.53 -0.1
1,248,251 + DVU1156 0.61 -0.5
1,248,276 - DVU1156 0.63 -1.3
1,248,442 + DVU1156 0.74 +0.6
1,248,488 + DVU1156 0.78 -1.6
1,248,501 - DVU1156 0.78 -0.5
1,248,503 - DVU1156 0.79 -0.4
1,248,600 + DVU1156 0.85 +0.1
1,248,608 - DVU1156 0.86 -1.5
1,248,608 - DVU1156 0.86 -0.1
1,248,806 - +0.1
1,248,982 + +0.3
1,249,275 - DVU1157 0.14 -0.8
1,249,277 + DVU1157 0.14 +0.2
1,249,310 + DVU1157 0.15 -1.3
1,249,474 - DVU1157 0.20 -0.5
1,249,611 + DVU1157 0.25 +0.3
1,249,789 + DVU1157 0.30 -0.1
1,249,791 + DVU1157 0.30 +0.1
1,249,891 + DVU1157 0.33 -0.1
1,249,912 + DVU1157 0.34 +2.2
1,249,920 + DVU1157 0.34 -0.7
1,249,928 - DVU1157 0.34 +0.0
1,250,029 - DVU1157 0.38 +0.3
1,250,095 + DVU1157 0.40 -0.4
1,250,280 + DVU1157 0.45 -0.0
1,250,413 + DVU1157 0.49 -0.9
1,250,464 + DVU1157 0.51 -0.1
1,250,530 - DVU1157 0.53 +0.0
1,250,530 - DVU1157 0.53 -1.5
1,250,557 - DVU1157 0.54 -0.2
1,250,576 + DVU1157 0.54 -0.6
1,250,593 + DVU1157 0.55 -0.4
1,250,601 - DVU1157 0.55 +1.4
1,250,601 - DVU1157 0.55 +0.3
1,250,620 + DVU1157 0.56 -0.6
1,250,626 - DVU1157 0.56 -1.5
1,250,632 + DVU1157 0.56 -1.1
1,250,673 + DVU1157 0.57 +0.4
1,250,749 + DVU1157 0.60 +0.0
1,250,755 + DVU1157 0.60 -0.1
1,250,763 - DVU1157 0.60 +0.1
1,250,795 + DVU1157 0.61 -1.1
1,250,831 + DVU1157 0.62 -0.4
1,250,973 - DVU1157 0.66 -0.9
1,251,030 - DVU1157 0.68 -0.4
1,251,207 + DVU1157 0.74 -1.8
1,251,233 - DVU1157 0.74 -0.7
1,251,285 - DVU1157 0.76 +0.1
1,251,324 - DVU1157 0.77 -1.0
1,251,365 + DVU1157 0.79 -1.3
1,251,385 + DVU1157 0.79 -0.3
1,251,408 + DVU1157 0.80 -1.2
1,251,466 + DVU1157 0.82 -1.1
1,251,484 - DVU1157 0.82 -2.5
1,251,484 - DVU1157 0.82 +0.9
1,251,508 + DVU1157 0.83 +0.1
1,251,528 + DVU1157 0.84 -0.5
1,251,534 + DVU1157 0.84 -0.2
1,251,598 - DVU1157 0.86 +0.1
1,251,662 - DVU1157 0.88 -0.6
1,251,671 - DVU1157 0.88 -0.9
1,251,672 - DVU1157 0.88 +0.2
1,251,768 - +0.0
1,251,812 + -0.5
1,251,847 + -0.2
1,251,885 + -0.9
1,251,912 - -1.1
1,251,974 - -0.7
1,252,056 + -0.9
1,252,074 - +0.5
1,252,124 + +0.4
1,252,176 + -0.9
1,252,230 - +0.7
1,252,254 - -0.1
1,252,483 - DVU1158 0.52 -1.3
1,252,553 + DVU1158 0.74 -0.1
1,252,632 - +0.1
1,252,757 + -0.2
1,252,774 - -0.3
1,252,830 + +0.3
1,252,870 - DVU1159 0.36 -1.3
1,253,002 + -0.6
1,253,045 + -0.7

Or see this region's nucleotide sequence