Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0752

Experiment: MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0751 and DVU0752 are separated by 88 nucleotidesDVU0752 and DVU0753 are separated by 97 nucleotidesDVU0753 and DVU0754 overlap by 4 nucleotides DVU0751: DVU0751 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 842,727 to 844,517 DVU0751 DVU0752: DVU0752 - amino acid ABC transporter, amino acid-binding protein (TIGR), at 844,606 to 845,433 DVU0752 DVU0753: DVU0753 - amino acid ABC transporter, ATP-binding protein (TIGR), at 845,531 to 846,262 DVU0753 DVU0754: DVU0754 - hypothetical protein (TIGR), at 846,259 to 846,393 DVU0754 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 843.879 kb on - strand, within DVU0751at 843.926 kb on + strand, within DVU0751at 843.957 kb on - strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.011 kb on - strand, within DVU0751at 844.068 kb on + strand, within DVU0751at 844.277 kb on - strand, within DVU0751at 844.301 kb on - strand, within DVU0751at 844.325 kb on + strand, within DVU0751at 844.402 kb on - strandat 844.440 kb on + strandat 844.466 kb on - strandat 844.472 kb on + strandat 844.472 kb on + strandat 844.479 kb on + strandat 844.479 kb on + strandat 844.480 kb on - strandat 844.480 kb on - strandat 844.486 kb on + strandat 844.557 kb on - strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.599 kb on - strandat 844.599 kb on - strandat 844.897 kb on - strand, within DVU0752at 844.904 kb on + strand, within DVU0752at 844.932 kb on + strand, within DVU0752at 844.937 kb on + strand, within DVU0752at 844.945 kb on - strand, within DVU0752at 844.988 kb on + strand, within DVU0752at 845.018 kb on - strand, within DVU0752at 845.031 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.044 kb on - strand, within DVU0752at 845.076 kb on + strand, within DVU0752at 845.189 kb on + strand, within DVU0752at 845.197 kb on - strand, within DVU0752at 845.227 kb on - strand, within DVU0752at 845.350 kb on + strand, within DVU0752at 845.358 kb on - strandat 845.397 kb on - strandat 845.411 kb on - strandat 845.421 kb on + strandat 845.455 kb on + strandat 845.542 kb on + strandat 845.609 kb on - strand, within DVU0753at 845.619 kb on + strand, within DVU0753at 845.632 kb on - strand, within DVU0753at 845.698 kb on - strand, within DVU0753at 845.768 kb on + strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.852 kb on - strand, within DVU0753at 845.902 kb on + strand, within DVU0753at 845.942 kb on - strand, within DVU0753at 845.949 kb on + strand, within DVU0753at 845.969 kb on - strand, within DVU0753at 845.980 kb on - strand, within DVU0753at 845.992 kb on + strand, within DVU0753at 845.998 kb on + strand, within DVU0753at 846.006 kb on - strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.033 kb on - strand, within DVU0753at 846.038 kb on - strand, within DVU0753at 846.060 kb on + strand, within DVU0753at 846.177 kb on - strand, within DVU0753at 846.187 kb on - strand, within DVU0753at 846.276 kb on - strand, within DVU0754

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient
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843,879 - DVU0751 0.64 +0.4
843,926 + DVU0751 0.67 -0.3
843,957 - DVU0751 0.69 -0.6
844,003 + DVU0751 0.71 -0.1
844,003 + DVU0751 0.71 +0.5
844,003 + DVU0751 0.71 +2.1
844,011 - DVU0751 0.72 -0.7
844,068 + DVU0751 0.75 +0.4
844,277 - DVU0751 0.87 +0.1
844,301 - DVU0751 0.88 -0.5
844,325 + DVU0751 0.89 +0.1
844,402 - +0.4
844,440 + -0.5
844,466 - -0.5
844,472 + -0.0
844,472 + +1.0
844,479 + +1.0
844,479 + -0.4
844,480 - +0.2
844,480 - -0.1
844,486 + +0.3
844,557 - +0.5
844,584 + -0.4
844,584 + +0.5
844,584 + +0.0
844,592 - +0.3
844,592 - +0.1
844,592 - +0.1
844,592 - -0.5
844,599 - +0.1
844,599 - -0.7
844,897 - DVU0752 0.35 +1.1
844,904 + DVU0752 0.36 +0.2
844,932 + DVU0752 0.39 -2.1
844,937 + DVU0752 0.40 -0.4
844,945 - DVU0752 0.41 +0.7
844,988 + DVU0752 0.46 +1.1
845,018 - DVU0752 0.50 +0.9
845,031 + DVU0752 0.51 -0.1
845,036 + DVU0752 0.52 +0.4
845,036 + DVU0752 0.52 +0.0
845,044 - DVU0752 0.53 -0.5
845,076 + DVU0752 0.57 +0.3
845,189 + DVU0752 0.70 +0.3
845,197 - DVU0752 0.71 +0.8
845,227 - DVU0752 0.75 +0.3
845,350 + DVU0752 0.90 +0.8
845,358 - -0.4
845,397 - -0.3
845,411 - +0.2
845,421 + -0.2
845,455 + -0.6
845,542 + +0.1
845,609 - DVU0753 0.11 +0.0
845,619 + DVU0753 0.12 -0.0
845,632 - DVU0753 0.14 +0.1
845,698 - DVU0753 0.23 +0.4
845,768 + DVU0753 0.32 -1.0
845,805 - DVU0753 0.37 +0.1
845,805 - DVU0753 0.37 -0.5
845,852 - DVU0753 0.44 +0.3
845,902 + DVU0753 0.51 -0.1
845,942 - DVU0753 0.56 -0.4
845,949 + DVU0753 0.57 -2.4
845,969 - DVU0753 0.60 +0.9
845,980 - DVU0753 0.61 +0.5
845,992 + DVU0753 0.63 +0.4
845,998 + DVU0753 0.64 +0.7
846,006 - DVU0753 0.65 -0.5
846,030 + DVU0753 0.68 +1.2
846,030 + DVU0753 0.68 -0.3
846,033 - DVU0753 0.69 -0.4
846,038 - DVU0753 0.69 -0.4
846,060 + DVU0753 0.72 +0.7
846,177 - DVU0753 0.88 +0.0
846,187 - DVU0753 0.90 +1.4
846,276 - DVU0754 0.13 +0.2

Or see this region's nucleotide sequence