Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3326 and Rv3327 are separated by 54 nucleotides Rv3327 and Rv3328c overlap by 68 nucleotides Rv3328c and Rv3329 are separated by 59 nucleotides
Rv3325: Rv3325 - Probable transposase for insertion sequence element IS6110 (fragment), at 3,710,433 to 3,710,759
Rv3325
Rv3326: Rv3326 - Probable transposase, at 3,710,708 to 3,711,694
Rv3326
Rv3327: Rv3327 - Probable transposase fusion protein, at 3,711,749 to 3,713,461
Rv3327
Rv3328c: Rv3328c - Probable alternative RNA polymerase sigma factor (fragment) SigJ, at 3,713,394 to 3,714,332
Rv3328c
Rv3329: Rv3329 - Probable aminotransferase, at 3,714,392 to 3,715,708
Rv3329
Position (kb)
3711
3712
3713
3714 Strain fitness (log2 ratio)
-1
0
1 at 3712.096 kb on - strand, within Rv3327 at 3712.096 kb on - strand, within Rv3327 at 3712.807 kb on + strand, within Rv3327 at 3712.814 kb on + strand, within Rv3327 at 3712.848 kb on + strand, within Rv3327 at 3712.856 kb on - strand, within Rv3327 at 3712.856 kb on - strand, within Rv3327 at 3712.884 kb on + strand, within Rv3327 at 3713.180 kb on + strand, within Rv3327 at 3713.181 kb on - strand, within Rv3327 at 3713.327 kb on + strand at 3713.328 kb on - strand at 3713.659 kb on - strand, within Rv3328c at 3714.112 kb on + strand, within Rv3328c at 3714.112 kb on + strand, within Rv3328c at 3714.112 kb on + strand, within Rv3328c at 3714.113 kb on - strand, within Rv3328c at 3714.281 kb on - strand at 3714.352 kb on + strand at 3714.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,712,096 - Rv3327 0.20 -0.2 3,712,096 - Rv3327 0.20 -0.1 3,712,807 + Rv3327 0.62 -0.1 3,712,814 + Rv3327 0.62 -0.2 3,712,848 + Rv3327 0.64 +0.0 3,712,856 - Rv3327 0.65 -0.1 3,712,856 - Rv3327 0.65 -0.3 3,712,884 + Rv3327 0.66 -0.2 3,713,180 + Rv3327 0.84 +0.7 3,713,181 - Rv3327 0.84 -0.2 3,713,327 + -1.5 3,713,328 - +0.3 3,713,659 - Rv3328c 0.28 -0.9 3,714,112 + Rv3328c 0.76 -0.7 3,714,112 + Rv3328c 0.76 -0.2 3,714,112 + Rv3328c 0.76 -0.7 3,714,113 - Rv3328c 0.77 +1.0 3,714,281 - -0.4 3,714,352 + -0.0 3,714,353 - +0.7
Or see this region's nucleotide sequence