Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0048c and Rv0049 are separated by 133 nucleotides Rv0049 and Rv0050 are separated by 418 nucleotides Rv0050 and Rv0051 overlap by 4 nucleotides
Rv0048c: Rv0048c - Possible membrane protein, at 51,828 to 52,697
Rv0048c
Rv0049: Rv0049 - Conserved hypothetical protein, at 52,831 to 53,244
Rv0049
Rv0050: Rv0050 - Probable bifunctional penicillin-binding protein 1A/1B PonA1 (murein polymerase) (PBP1): penicillin-insensitive transglycosylase (peptidoglycan TGASE) + penicillin-sensitive transpeptidase (DD-transpeptidase), at 53,663 to 55,699
Rv0050
Rv0051: Rv0051 - Probable conserved transmembrane protein, at 55,696 to 57,378
Rv0051
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.706 kb on + strand at 52.706 kb on + strand at 52.706 kb on + strand at 52.707 kb on - strand at 52.707 kb on - strand at 52.709 kb on + strand at 52.746 kb on + strand at 52.775 kb on - strand at 52.797 kb on + strand at 52.798 kb on - strand at 52.829 kb on + strand at 52.829 kb on + strand at 52.837 kb on + strand at 52.837 kb on + strand at 52.837 kb on + strand at 53.114 kb on + strand, within Rv0049 at 53.114 kb on + strand, within Rv0049 at 53.152 kb on + strand, within Rv0049 at 53.152 kb on + strand, within Rv0049 at 53.152 kb on + strand, within Rv0049 at 53.152 kb on + strand, within Rv0049 at 54.173 kb on + strand, within Rv0050 at 54.635 kb on + strand, within Rv0050 at 54.635 kb on + strand, within Rv0050 at 54.638 kb on + strand, within Rv0050 at 54.759 kb on + strand, within Rv0050 at 54.870 kb on - strand, within Rv0050 at 55.086 kb on - strand, within Rv0050 at 55.252 kb on - strand, within Rv0050 at 55.560 kb on + strand at 55.796 kb on + strand at 56.008 kb on + strand, within Rv0051 at 56.155 kb on + strand, within Rv0051 at 56.157 kb on + strand, within Rv0051 at 56.186 kb on - strand, within Rv0051 at 56.229 kb on - strand, within Rv0051 at 56.521 kb on + strand, within Rv0051 at 56.540 kb on - strand, within Rv0051
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 52,706 + -0.2 52,706 + -0.3 52,706 + -0.1 52,707 - +0.1 52,707 - -0.3 52,709 + -0.2 52,746 + +0.3 52,775 - -1.0 52,797 + -0.8 52,798 - -0.1 52,829 + -0.6 52,829 + -0.5 52,837 + -0.1 52,837 + +0.5 52,837 + -0.4 53,114 + Rv0049 0.68 -0.1 53,114 + Rv0049 0.68 -0.1 53,152 + Rv0049 0.78 +0.7 53,152 + Rv0049 0.78 -1.2 53,152 + Rv0049 0.78 -1.2 53,152 + Rv0049 0.78 -1.0 54,173 + Rv0050 0.25 -1.2 54,635 + Rv0050 0.48 +1.7 54,635 + Rv0050 0.48 -0.5 54,638 + Rv0050 0.48 -1.4 54,759 + Rv0050 0.54 -0.1 54,870 - Rv0050 0.59 -3.0 55,086 - Rv0050 0.70 +0.9 55,252 - Rv0050 0.78 +1.1 55,560 + -0.3 55,796 + -0.3 56,008 + Rv0051 0.19 +0.1 56,155 + Rv0051 0.27 +0.1 56,157 + Rv0051 0.27 -0.1 56,186 - Rv0051 0.29 +0.1 56,229 - Rv0051 0.32 -0.3 56,521 + Rv0051 0.49 +0.2 56,540 - Rv0051 0.50 -0.3
Or see this region's nucleotide sequence