Experiment: MoLS4 with L-Threonine (10mM) as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0084 and trpB-1 are separated by 516 nucleotides trpB-1 and rrsA are separated by 491 nucleotides
DVU0084: DVU0084 - translation initiation factor, aIF-2BI family, putative (TIGR), at 102,596 to 103,648
DVU0084
DVU0085: trpB-1 - tryptophan synthase, beta subunit (TIGR), at 104,165 to 105,409
trpB-1
Dv16SA: rrsA - 16S ribosomal RNA (RefSeq), at 105,901 to 107,441
rrsA
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1 at 103.189 kb on - strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.213 kb on - strand, within DVU0084 at 103.306 kb on + strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.353 kb on + strand, within DVU0084 at 103.361 kb on - strand, within DVU0084 at 103.363 kb on + strand, within DVU0084 at 103.366 kb on - strand, within DVU0084 at 103.371 kb on - strand, within DVU0084 at 103.377 kb on + strand, within DVU0084 at 103.417 kb on - strand, within DVU0084 at 103.489 kb on + strand, within DVU0084 at 103.515 kb on + strand, within DVU0084 at 103.560 kb on + strand at 103.611 kb on - strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.716 kb on + strand at 103.719 kb on - strand at 103.728 kb on - strand at 103.739 kb on + strand at 103.739 kb on + strand at 103.851 kb on + strand at 103.851 kb on + strand at 103.859 kb on - strand at 103.862 kb on - strand at 103.896 kb on - strand at 103.971 kb on + strand at 103.979 kb on - strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 104.083 kb on + strand at 104.140 kb on - strand at 104.170 kb on - strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.283 kb on + strand at 104.293 kb on + strand, within trpB-1 at 104.299 kb on + strand, within trpB-1 at 104.313 kb on - strand, within trpB-1 at 104.364 kb on + strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.448 kb on - strand, within trpB-1 at 104.458 kb on + strand, within trpB-1 at 104.464 kb on - strand, within trpB-1 at 104.521 kb on + strand, within trpB-1 at 104.531 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.566 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.588 kb on + strand, within trpB-1 at 104.599 kb on - strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.637 kb on - strand, within trpB-1 at 104.659 kb on + strand, within trpB-1 at 104.659 kb on + strand, within trpB-1 at 104.688 kb on + strand, within trpB-1 at 104.726 kb on - strand, within trpB-1 at 104.734 kb on - strand, within trpB-1 at 104.754 kb on - strand, within trpB-1 at 104.821 kb on - strand, within trpB-1 at 104.896 kb on + strand, within trpB-1 at 104.956 kb on + strand, within trpB-1 at 104.975 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.997 kb on + strand, within trpB-1 at 105.010 kb on - strand, within trpB-1 at 105.010 kb on - strand, within trpB-1 at 105.034 kb on - strand, within trpB-1 at 105.036 kb on + strand, within trpB-1 at 105.067 kb on + strand, within trpB-1 at 105.068 kb on + strand, within trpB-1 at 105.069 kb on - strand, within trpB-1 at 105.091 kb on - strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.106 kb on + strand, within trpB-1 at 105.106 kb on + strand, within trpB-1 at 105.109 kb on - strand, within trpB-1 at 105.109 kb on - strand, within trpB-1 at 105.123 kb on + strand, within trpB-1 at 105.131 kb on - strand, within trpB-1 at 105.146 kb on - strand, within trpB-1 at 105.154 kb on - strand, within trpB-1 at 105.201 kb on + strand, within trpB-1 at 105.211 kb on + strand, within trpB-1 at 105.237 kb on + strand, within trpB-1 at 105.274 kb on - strand, within trpB-1 at 105.356 kb on - strand at 105.372 kb on + strand at 105.383 kb on + strand at 105.391 kb on - strand at 105.395 kb on + strand at 105.395 kb on - strand at 105.422 kb on + strand at 105.427 kb on + strand at 105.440 kb on - strand at 105.477 kb on - strand at 105.492 kb on + strand at 105.500 kb on - strand at 105.502 kb on + strand at 105.510 kb on - strand at 105.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (10mM) as nutrient remove 103,189 - DVU0084 0.56 -2.1 103,210 + DVU0084 0.58 -0.3 103,210 + DVU0084 0.58 -0.1 103,213 - DVU0084 0.59 -0.1 103,306 + DVU0084 0.67 -0.5 103,319 - DVU0084 0.69 -0.4 103,319 - DVU0084 0.69 +0.4 103,333 - DVU0084 0.70 +0.2 103,333 - DVU0084 0.70 -0.4 103,353 + DVU0084 0.72 -0.3 103,361 - DVU0084 0.73 +0.7 103,363 + DVU0084 0.73 +0.0 103,366 - DVU0084 0.73 -0.5 103,371 - DVU0084 0.74 +1.4 103,377 + DVU0084 0.74 +1.2 103,417 - DVU0084 0.78 -0.9 103,489 + DVU0084 0.85 +0.1 103,515 + DVU0084 0.87 +1.2 103,560 + -0.8 103,611 - -0.0 103,711 + +0.6 103,711 + +0.5 103,716 + +0.2 103,719 - -0.8 103,728 - +0.7 103,739 + +0.4 103,739 + +1.4 103,851 + -0.8 103,851 + -0.2 103,859 - -0.1 103,862 - -0.2 103,896 - +0.1 103,971 + -0.4 103,979 - -1.2 103,983 + -0.5 103,983 + -0.6 103,983 + +0.2 103,983 + +0.2 103,991 - -0.2 103,991 - +0.1 103,991 - -0.3 103,991 - +0.2 103,991 - +1.0 104,083 + -0.0 104,140 - -0.9 104,170 - +0.4 104,244 - +0.2 104,244 - -0.2 104,251 + +1.7 104,251 + -0.4 104,251 + -0.0 104,251 + -0.2 104,259 - -0.2 104,259 - -0.6 104,259 - +1.6 104,259 - +1.1 104,283 + -0.4 104,293 + trpB-1 DVU0085 0.10 +0.1 104,299 + trpB-1 DVU0085 0.11 -1.4 104,313 - trpB-1 DVU0085 0.12 +1.7 104,364 + trpB-1 DVU0085 0.16 +0.1 104,384 - trpB-1 DVU0085 0.18 -0.0 104,384 - trpB-1 DVU0085 0.18 +0.1 104,395 + trpB-1 DVU0085 0.18 -0.3 104,395 + trpB-1 DVU0085 0.18 +0.2 104,395 + trpB-1 DVU0085 0.18 -0.4 104,395 + trpB-1 DVU0085 0.18 -0.3 104,403 - trpB-1 DVU0085 0.19 +0.1 104,403 - trpB-1 DVU0085 0.19 +0.2 104,403 - trpB-1 DVU0085 0.19 +0.4 104,403 - trpB-1 DVU0085 0.19 -0.1 104,403 - trpB-1 DVU0085 0.19 +0.2 104,448 - trpB-1 DVU0085 0.23 +0.1 104,458 + trpB-1 DVU0085 0.24 +1.7 104,464 - trpB-1 DVU0085 0.24 +0.3 104,521 + trpB-1 DVU0085 0.29 +0.9 104,531 + trpB-1 DVU0085 0.29 +0.3 104,536 + trpB-1 DVU0085 0.30 -1.7 104,536 + trpB-1 DVU0085 0.30 +0.1 104,566 + trpB-1 DVU0085 0.32 -0.0 104,569 + trpB-1 DVU0085 0.32 -0.3 104,569 + trpB-1 DVU0085 0.32 +0.1 104,588 + trpB-1 DVU0085 0.34 +0.6 104,599 - trpB-1 DVU0085 0.35 +0.2 104,600 + trpB-1 DVU0085 0.35 -0.1 104,600 + trpB-1 DVU0085 0.35 -2.2 104,637 - trpB-1 DVU0085 0.38 +0.5 104,659 + trpB-1 DVU0085 0.40 +0.2 104,659 + trpB-1 DVU0085 0.40 -0.6 104,688 + trpB-1 DVU0085 0.42 -0.0 104,726 - trpB-1 DVU0085 0.45 +0.3 104,734 - trpB-1 DVU0085 0.46 -0.0 104,754 - trpB-1 DVU0085 0.47 +0.4 104,821 - trpB-1 DVU0085 0.53 -0.1 104,896 + trpB-1 DVU0085 0.59 -0.3 104,956 + trpB-1 DVU0085 0.64 +0.8 104,975 + trpB-1 DVU0085 0.65 -0.3 104,980 + trpB-1 DVU0085 0.65 -0.1 104,980 + trpB-1 DVU0085 0.65 -1.1 104,980 + trpB-1 DVU0085 0.65 +0.2 104,997 + trpB-1 DVU0085 0.67 -0.0 105,010 - trpB-1 DVU0085 0.68 +0.6 105,010 - trpB-1 DVU0085 0.68 -0.0 105,034 - trpB-1 DVU0085 0.70 -0.4 105,036 + trpB-1 DVU0085 0.70 -0.1 105,067 + trpB-1 DVU0085 0.72 -0.7 105,068 + trpB-1 DVU0085 0.73 +0.1 105,069 - trpB-1 DVU0085 0.73 +0.7 105,091 - trpB-1 DVU0085 0.74 -0.1 105,101 + trpB-1 DVU0085 0.75 +0.9 105,101 + trpB-1 DVU0085 0.75 +1.2 105,101 + trpB-1 DVU0085 0.75 -0.1 105,106 + trpB-1 DVU0085 0.76 +0.6 105,106 + trpB-1 DVU0085 0.76 -0.3 105,109 - trpB-1 DVU0085 0.76 -0.2 105,109 - trpB-1 DVU0085 0.76 -0.5 105,123 + trpB-1 DVU0085 0.77 -0.4 105,131 - trpB-1 DVU0085 0.78 -0.1 105,146 - trpB-1 DVU0085 0.79 +0.6 105,154 - trpB-1 DVU0085 0.79 +0.4 105,201 + trpB-1 DVU0085 0.83 +0.9 105,211 + trpB-1 DVU0085 0.84 +0.1 105,237 + trpB-1 DVU0085 0.86 -0.1 105,274 - trpB-1 DVU0085 0.89 -0.1 105,356 - -0.8 105,372 + +1.4 105,383 + -0.3 105,391 - +1.4 105,395 + -0.0 105,395 - -0.7 105,422 + -0.4 105,427 + +0.0 105,440 - -0.2 105,477 - -0.0 105,492 + -0.4 105,500 - -0.1 105,502 + -0.2 105,510 - -0.1 105,659 + -0.2
Or see this region's nucleotide sequence