Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0082

Experiment: MoLS4 with L-Threonine (10mM) as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVUA0081 and xerD are separated by 304 nucleotidesxerD and DVUA0084 are separated by 412 nucleotidesDVUA0084 and DVUA0085 are separated by 54 nucleotides DVUA0081: DVUA0081 - glycosyl transferase, group 1/2 family protein (TIGR), at 107,247 to 109,361 DVUA0081 DVUA0082: xerD - site-specific recombinase, phage integrase family (TIGR), at 109,666 to 110,697 xerD DVUA0084: DVUA0084 - transcriptional regulator, AbrB family (TIGR), at 111,110 to 111,301 DVUA0084 DVUA0085: DVUA0085 - conserved hypothetical protein (TIGR), at 111,356 to 114,886 DVUA0085 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1at 108.949 kb on + strand, within DVUA0081at 109.181 kb on + strandat 109.189 kb on - strandat 109.189 kb on - strandat 109.376 kb on - strandat 109.376 kb on - strandat 109.376 kb on - strandat 109.382 kb on - strandat 109.388 kb on + strandat 109.440 kb on - strandat 109.871 kb on + strand, within xerDat 109.879 kb on - strand, within xerDat 109.913 kb on + strand, within xerDat 109.921 kb on - strand, within xerDat 109.991 kb on + strand, within xerDat 109.999 kb on - strand, within xerDat 109.999 kb on - strand, within xerDat 110.006 kb on + strand, within xerDat 110.014 kb on - strand, within xerDat 110.017 kb on - strand, within xerDat 110.311 kb on + strand, within xerDat 110.453 kb on - strand, within xerDat 110.494 kb on + strand, within xerDat 110.557 kb on + strand, within xerDat 110.721 kb on + strandat 110.729 kb on - strandat 110.743 kb on - strandat 110.743 kb on - strandat 110.763 kb on - strandat 110.765 kb on + strandat 110.803 kb on + strandat 111.038 kb on + strandat 111.075 kb on + strandat 111.254 kb on + strand, within DVUA0084at 111.284 kb on - strandat 111.375 kb on + strandat 111.451 kb on + strandat 111.459 kb on - strandat 111.525 kb on - strandat 111.676 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (10mM) as nutrient
remove
108,949 + DVUA0081 0.80 -0.8
109,181 + -0.4
109,189 - +0.3
109,189 - -0.4
109,376 - +0.8
109,376 - +0.5
109,376 - -0.3
109,382 - -0.6
109,388 + +0.8
109,440 - -0.6
109,871 + xerD DVUA0082 0.20 -1.3
109,879 - xerD DVUA0082 0.21 -0.6
109,913 + xerD DVUA0082 0.24 -1.2
109,921 - xerD DVUA0082 0.25 -0.3
109,991 + xerD DVUA0082 0.31 -0.7
109,999 - xerD DVUA0082 0.32 -1.1
109,999 - xerD DVUA0082 0.32 -0.9
110,006 + xerD DVUA0082 0.33 -0.3
110,014 - xerD DVUA0082 0.34 +0.0
110,017 - xerD DVUA0082 0.34 -0.3
110,311 + xerD DVUA0082 0.62 -0.2
110,453 - xerD DVUA0082 0.76 -0.8
110,494 + xerD DVUA0082 0.80 -0.4
110,557 + xerD DVUA0082 0.86 -0.1
110,721 + -0.6
110,729 - -1.1
110,743 - +0.3
110,743 - -1.0
110,763 - -0.3
110,765 + -0.5
110,803 + +0.2
111,038 + +1.5
111,075 + -0.6
111,254 + DVUA0084 0.75 +0.0
111,284 - -0.4
111,375 + -0.3
111,451 + -1.1
111,459 - +1.0
111,525 - -0.6
111,676 - -0.2

Or see this region's nucleotide sequence