Experiment: MoLS4 with L-Threonine (10mM) as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0614 and DVU0616 are separated by 179 nucleotides DVU0616 and DVU0617 overlap by 8 nucleotides DVU0617 and DVU0618 are separated by 29 nucleotides DVU0618 and DVU0619 are separated by 99 nucleotides
DVU0614: DVU0614 - hypothetical protein (TIGR), at 683,049 to 683,330
DVU0614
DVU0616: DVU0616 - hypothetical protein (TIGR), at 683,510 to 683,902
DVU0616
DVU0617: DVU0617 - hypothetical protein (TIGR), at 683,895 to 684,185
DVU0617
DVU0618: DVU0618 - hypothetical protein (TIGR), at 684,215 to 684,370
DVU0618
DVU0619: DVU0619 - sigma-54 dependent transcriptional regulator (TIGR), at 684,470 to 685,909
DVU0619
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 682.910 kb on + strand at 682.910 kb on + strand at 682.915 kb on + strand at 682.918 kb on - strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.975 kb on + strand at 683.004 kb on + strand at 683.004 kb on + strand at 683.011 kb on + strand at 683.060 kb on - strand at 683.089 kb on - strand, within DVU0614 at 683.123 kb on - strand, within DVU0614 at 683.158 kb on + strand, within DVU0614 at 683.170 kb on + strand, within DVU0614 at 683.220 kb on + strand, within DVU0614 at 683.262 kb on + strand, within DVU0614 at 683.285 kb on - strand, within DVU0614 at 683.297 kb on - strand, within DVU0614 at 683.303 kb on - strand at 683.313 kb on - strand at 683.365 kb on + strand at 683.375 kb on + strand at 683.428 kb on - strand at 683.530 kb on + strand at 683.538 kb on - strand at 683.642 kb on + strand, within DVU0616 at 683.708 kb on - strand, within DVU0616 at 683.782 kb on + strand, within DVU0616 at 683.810 kb on + strand, within DVU0616 at 683.826 kb on - strand, within DVU0616 at 683.837 kb on - strand, within DVU0616 at 683.864 kb on + strand at 683.872 kb on - strand at 683.931 kb on - strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.973 kb on - strand, within DVU0617 at 683.975 kb on + strand, within DVU0617 at 683.992 kb on - strand, within DVU0617 at 684.029 kb on + strand, within DVU0617 at 684.037 kb on - strand, within DVU0617 at 684.141 kb on + strand, within DVU0617 at 684.169 kb on + strand at 684.339 kb on + strand, within DVU0618 at 684.638 kb on + strand, within DVU0619 at 684.692 kb on + strand, within DVU0619 at 684.698 kb on - strand, within DVU0619 at 684.702 kb on + strand, within DVU0619 at 684.710 kb on - strand, within DVU0619 at 684.758 kb on - strand, within DVU0619 at 684.844 kb on + strand, within DVU0619 at 684.987 kb on - strand, within DVU0619 at 685.054 kb on + strand, within DVU0619 at 685.110 kb on + strand, within DVU0619
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (10mM) as nutrient remove 682,910 + +0.1 682,910 + -0.6 682,915 + -0.4 682,918 - -0.1 682,920 + -2.1 682,920 + -0.9 682,920 + +0.2 682,928 - +0.6 682,928 - -0.3 682,928 - -0.4 682,928 - +0.3 682,975 + +0.3 683,004 + -0.4 683,004 + +0.7 683,011 + -0.3 683,060 - -0.9 683,089 - DVU0614 0.14 -0.5 683,123 - DVU0614 0.26 -0.6 683,158 + DVU0614 0.39 +0.4 683,170 + DVU0614 0.43 +0.3 683,220 + DVU0614 0.61 +0.0 683,262 + DVU0614 0.76 -0.5 683,285 - DVU0614 0.84 -0.3 683,297 - DVU0614 0.88 -0.1 683,303 - +0.2 683,313 - -0.4 683,365 + +0.5 683,375 + -0.6 683,428 - -0.2 683,530 + -1.0 683,538 - -0.4 683,642 + DVU0616 0.34 -1.0 683,708 - DVU0616 0.50 -0.1 683,782 + DVU0616 0.69 -1.5 683,810 + DVU0616 0.76 -0.3 683,826 - DVU0616 0.80 -0.0 683,837 - DVU0616 0.83 +0.5 683,864 + -0.3 683,872 - -0.5 683,931 - DVU0617 0.12 +0.9 683,965 + DVU0617 0.24 +0.6 683,965 + DVU0617 0.24 +0.1 683,965 + DVU0617 0.24 +0.0 683,973 - DVU0617 0.27 -0.2 683,975 + DVU0617 0.27 -1.1 683,992 - DVU0617 0.33 -0.5 684,029 + DVU0617 0.46 -0.6 684,037 - DVU0617 0.49 -0.2 684,141 + DVU0617 0.85 -0.3 684,169 + -0.8 684,339 + DVU0618 0.79 -0.6 684,638 + DVU0619 0.12 -0.2 684,692 + DVU0619 0.15 -0.1 684,698 - DVU0619 0.16 +0.7 684,702 + DVU0619 0.16 -0.4 684,710 - DVU0619 0.17 -0.4 684,758 - DVU0619 0.20 -0.7 684,844 + DVU0619 0.26 -0.3 684,987 - DVU0619 0.36 -0.7 685,054 + DVU0619 0.41 +0.1 685,110 + DVU0619 0.44 +0.0
Or see this region's nucleotide sequence