Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0949

Experiment: MoLS4 with L-Threonine (10mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0947 and DVU0948 are separated by 175 nucleotidesDVU0948 and DVU0949 are separated by 47 nucleotidesDVU0949 and moeA-2 are separated by 79 nucleotides DVU0947: DVU0947 - membrane protein, putative (TIGR), at 1,041,478 to 1,042,383 DVU0947 DVU0948: DVU0948 - conserved hypothetical protein (TIGR), at 1,042,559 to 1,042,987 DVU0948 DVU0949: DVU0949 - conserved domain protein (TIGR), at 1,043,035 to 1,043,796 DVU0949 DVU0951: moeA-2 - molybdopterin biosynthesis MoeA protein, putative (TIGR), at 1,043,876 to 1,045,294 moeA-2 Position (kb) 1043 1044Strain fitness (log2 ratio) -3 -2 -1 0 1at 1042.272 kb on - strand, within DVU0947at 1042.286 kb on + strand, within DVU0947at 1042.296 kb on - strandat 1042.431 kb on + strandat 1042.512 kb on + strandat 1042.556 kb on - strandat 1042.564 kb on + strandat 1042.706 kb on + strand, within DVU0948at 1042.723 kb on + strand, within DVU0948at 1042.782 kb on + strand, within DVU0948at 1042.788 kb on + strand, within DVU0948at 1042.866 kb on - strand, within DVU0948at 1042.871 kb on - strand, within DVU0948at 1042.878 kb on - strand, within DVU0948at 1042.952 kb on - strandat 1043.032 kb on + strandat 1043.047 kb on + strandat 1043.047 kb on + strandat 1043.117 kb on - strand, within DVU0949at 1043.185 kb on - strand, within DVU0949at 1043.246 kb on + strand, within DVU0949at 1043.278 kb on - strand, within DVU0949at 1043.367 kb on - strand, within DVU0949at 1043.452 kb on - strand, within DVU0949at 1043.469 kb on - strand, within DVU0949at 1043.482 kb on + strand, within DVU0949at 1043.501 kb on + strand, within DVU0949at 1043.506 kb on + strand, within DVU0949at 1043.532 kb on + strand, within DVU0949at 1043.567 kb on - strand, within DVU0949at 1043.587 kb on - strand, within DVU0949at 1043.655 kb on - strand, within DVU0949at 1043.666 kb on - strand, within DVU0949at 1043.753 kb on + strandat 1043.901 kb on - strandat 1043.905 kb on + strandat 1043.915 kb on + strandat 1043.915 kb on + strandat 1043.942 kb on + strandat 1043.989 kb on + strandat 1044.210 kb on + strand, within moeA-2at 1044.234 kb on + strand, within moeA-2at 1044.254 kb on + strand, within moeA-2at 1044.335 kb on - strand, within moeA-2at 1044.477 kb on - strand, within moeA-2at 1044.488 kb on + strand, within moeA-2at 1044.683 kb on - strand, within moeA-2at 1044.737 kb on + strand, within moeA-2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (10mM) as nutrient
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1,042,272 - DVU0947 0.88 +0.3
1,042,286 + DVU0947 0.89 -1.1
1,042,296 - -0.3
1,042,431 + +0.1
1,042,512 + +0.8
1,042,556 - -0.0
1,042,564 + +0.5
1,042,706 + DVU0948 0.34 +0.7
1,042,723 + DVU0948 0.38 +0.1
1,042,782 + DVU0948 0.52 +0.0
1,042,788 + DVU0948 0.53 +0.2
1,042,866 - DVU0948 0.72 +1.0
1,042,871 - DVU0948 0.73 -1.1
1,042,878 - DVU0948 0.74 +1.2
1,042,952 - +0.2
1,043,032 + -0.5
1,043,047 + -0.1
1,043,047 + -0.8
1,043,117 - DVU0949 0.11 +0.5
1,043,185 - DVU0949 0.20 -0.6
1,043,246 + DVU0949 0.28 -0.0
1,043,278 - DVU0949 0.32 -0.1
1,043,367 - DVU0949 0.44 +0.6
1,043,452 - DVU0949 0.55 +1.1
1,043,469 - DVU0949 0.57 -2.9
1,043,482 + DVU0949 0.59 +0.2
1,043,501 + DVU0949 0.61 +0.6
1,043,506 + DVU0949 0.62 +0.1
1,043,532 + DVU0949 0.65 -0.4
1,043,567 - DVU0949 0.70 -0.5
1,043,587 - DVU0949 0.72 -0.2
1,043,655 - DVU0949 0.81 -0.1
1,043,666 - DVU0949 0.83 -0.4
1,043,753 + -1.7
1,043,901 - +0.2
1,043,905 + +0.6
1,043,915 + +0.3
1,043,915 + -0.3
1,043,942 + -0.6
1,043,989 + -0.0
1,044,210 + moeA-2 DVU0951 0.24 -0.6
1,044,234 + moeA-2 DVU0951 0.25 +1.0
1,044,254 + moeA-2 DVU0951 0.27 +0.4
1,044,335 - moeA-2 DVU0951 0.32 +1.2
1,044,477 - moeA-2 DVU0951 0.42 -0.1
1,044,488 + moeA-2 DVU0951 0.43 +0.2
1,044,683 - moeA-2 DVU0951 0.57 +0.5
1,044,737 + moeA-2 DVU0951 0.61 +0.0

Or see this region's nucleotide sequence