Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0503c and Rv0504c are separated by 22 nucleotides Rv0504c and Rv0505c are separated by 161 nucleotides Rv0505c and Rv0506 are separated by 173 nucleotides Rv0506 and Rv0507 overlap by 4 nucleotides
Rv0503c: Rv0503c - Cyclopropane-fatty-acyl-phospholipid synthase 2 CmaA2 (cyclopropane fatty acid synthase) (CFA synthase) (cyclopropane mycolic acid synthase 2) (mycolic acid trans-cyclopropane synthetase), at 593,871 to 594,779
Rv0503c
Rv0504c: Rv0504c - Conserved protein, at 594,802 to 595,302
Rv0504c
Rv0505c: Rv0505c - Possible phosphoserine phosphatase SerB1 (PSP) (O-phosphoserine phosphohydrolase) (pspase), at 595,464 to 596,585
Rv0505c
Rv0506: Rv0506 - Probable conserved membrane protein MmpS2, at 596,759 to 597,202
Rv0506
Rv0507: Rv0507 - Probable conserved transmembrane transport protein MmpL2, at 597,199 to 600,105
Rv0507
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 594.499 kb on + strand, within Rv0503c at 594.500 kb on - strand, within Rv0503c at 594.607 kb on + strand, within Rv0503c at 594.608 kb on - strand, within Rv0503c at 594.629 kb on + strand, within Rv0503c at 594.629 kb on + strand, within Rv0503c at 594.630 kb on - strand, within Rv0503c at 594.630 kb on - strand, within Rv0503c at 594.647 kb on - strand, within Rv0503c at 594.658 kb on + strand, within Rv0503c at 594.658 kb on + strand, within Rv0503c at 594.658 kb on + strand, within Rv0503c at 594.659 kb on - strand, within Rv0503c at 594.659 kb on - strand, within Rv0503c at 594.659 kb on - strand, within Rv0503c at 594.659 kb on - strand, within Rv0503c at 594.659 kb on - strand, within Rv0503c at 594.791 kb on + strand at 594.791 kb on + strand at 594.792 kb on - strand at 594.804 kb on - strand at 594.804 kb on - strand at 594.983 kb on + strand, within Rv0504c at 595.175 kb on + strand, within Rv0504c at 595.175 kb on + strand, within Rv0504c at 595.327 kb on - strand at 595.333 kb on + strand at 595.334 kb on - strand at 595.334 kb on - strand at 595.334 kb on - strand at 595.341 kb on - strand at 595.398 kb on + strand at 595.399 kb on - strand at 595.481 kb on + strand at 596.650 kb on - strand at 596.654 kb on + strand at 596.659 kb on - strand at 596.682 kb on + strand at 596.683 kb on - strand at 596.683 kb on - strand at 596.691 kb on + strand at 596.692 kb on - strand at 596.708 kb on + strand at 596.720 kb on + strand at 596.721 kb on - strand at 596.730 kb on + strand at 596.731 kb on - strand at 596.731 kb on - strand at 596.845 kb on + strand, within Rv0506 at 596.846 kb on - strand, within Rv0506 at 596.846 kb on - strand, within Rv0506 at 596.846 kb on - strand, within Rv0506 at 596.846 kb on - strand, within Rv0506 at 596.846 kb on - strand, within Rv0506 at 596.945 kb on + strand, within Rv0506 at 596.945 kb on + strand, within Rv0506 at 596.946 kb on - strand, within Rv0506 at 596.946 kb on - strand, within Rv0506 at 596.946 kb on - strand, within Rv0506 at 596.946 kb on - strand, within Rv0506 at 596.946 kb on - strand, within Rv0506 at 596.985 kb on - strand, within Rv0506 at 597.357 kb on - strand at 597.444 kb on - strand at 597.496 kb on + strand, within Rv0507 at 597.496 kb on + strand, within Rv0507 at 597.497 kb on - strand, within Rv0507 at 597.497 kb on - strand, within Rv0507 at 597.497 kb on - strand, within Rv0507 at 597.497 kb on - strand, within Rv0507 at 597.498 kb on + strand, within Rv0507
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 594,499 + Rv0503c 0.69 +1.7 594,500 - Rv0503c 0.69 -0.3 594,607 + Rv0503c 0.81 -0.3 594,608 - Rv0503c 0.81 -0.2 594,629 + Rv0503c 0.83 -0.2 594,629 + Rv0503c 0.83 -2.8 594,630 - Rv0503c 0.83 -1.2 594,630 - Rv0503c 0.83 -0.5 594,647 - Rv0503c 0.85 +0.6 594,658 + Rv0503c 0.87 -0.1 594,658 + Rv0503c 0.87 -0.4 594,658 + Rv0503c 0.87 -0.3 594,659 - Rv0503c 0.87 -0.3 594,659 - Rv0503c 0.87 +0.2 594,659 - Rv0503c 0.87 +1.1 594,659 - Rv0503c 0.87 +0.2 594,659 - Rv0503c 0.87 -0.3 594,791 + -0.1 594,791 + -1.9 594,792 - -0.6 594,804 - -1.5 594,804 - -0.2 594,983 + Rv0504c 0.36 -2.8 595,175 + Rv0504c 0.74 -1.3 595,175 + Rv0504c 0.74 -1.8 595,327 - -0.3 595,333 + +0.1 595,334 - +1.7 595,334 - -0.5 595,334 - -0.0 595,341 - -0.2 595,398 + -0.8 595,399 - -0.2 595,481 + +0.1 596,650 - -0.6 596,654 + -1.8 596,659 - +1.7 596,682 + -0.1 596,683 - -0.5 596,683 - -1.2 596,691 + -1.0 596,692 - -0.5 596,708 + +1.0 596,720 + -0.3 596,721 - +0.2 596,730 + +0.2 596,731 - -0.2 596,731 - +0.2 596,845 + Rv0506 0.19 +1.0 596,846 - Rv0506 0.20 -0.0 596,846 - Rv0506 0.20 +0.5 596,846 - Rv0506 0.20 -0.2 596,846 - Rv0506 0.20 +1.0 596,846 - Rv0506 0.20 +0.2 596,945 + Rv0506 0.42 +0.1 596,945 + Rv0506 0.42 +0.3 596,946 - Rv0506 0.42 +0.4 596,946 - Rv0506 0.42 +0.2 596,946 - Rv0506 0.42 -0.9 596,946 - Rv0506 0.42 -0.3 596,946 - Rv0506 0.42 -0.7 596,985 - Rv0506 0.51 +0.1 597,357 - +0.5 597,444 - -0.9 597,496 + Rv0507 0.10 -0.2 597,496 + Rv0507 0.10 -0.1 597,497 - Rv0507 0.10 -0.1 597,497 - Rv0507 0.10 -0.7 597,497 - Rv0507 0.10 -0.1 597,497 - Rv0507 0.10 -0.3 597,498 + Rv0507 0.10 -0.5
Or see this region's nucleotide sequence