Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0079 and Rv0080 overlap by 4 nucleotides Rv0080 and Rv0081 are separated by 94 nucleotides Rv0081 and Rv0082 are separated by 4 nucleotides Rv0082 and Rv0083 overlap by 4 nucleotides
Rv0079: Rv0079 - Unknown protein, at 88,204 to 89,025
Rv0079
Rv0080: Rv0080 - Conserved hypothetical protein, at 89,022 to 89,480
Rv0080
Rv0081: Rv0081 - Probable transcriptional regulatory protein, at 89,575 to 89,919
Rv0081
Rv0082: Rv0082 - Probable oxidoreductase, at 89,924 to 90,403
Rv0082
Rv0083: Rv0083 - Probable oxidoreductase, at 90,400 to 92,322
Rv0083
Position (kb) 89
90 Strain fitness (log2 ratio) -1
0
1 at 88.631 kb on + strand, within Rv0079 at 88.681 kb on + strand, within Rv0079 at 88.682 kb on - strand, within Rv0079 at 88.732 kb on + strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.954 kb on + strand at 88.954 kb on + strand at 89.271 kb on + strand, within Rv0080 at 89.271 kb on + strand, within Rv0080 at 89.272 kb on - strand, within Rv0080 at 89.370 kb on + strand, within Rv0080 at 89.371 kb on - strand, within Rv0080 at 89.471 kb on + strand at 89.472 kb on - strand at 89.593 kb on + strand at 89.594 kb on - strand at 89.747 kb on + strand, within Rv0081 at 89.917 kb on + strand at 90.015 kb on + strand, within Rv0082 at 90.101 kb on + strand, within Rv0082 at 90.290 kb on + strand, within Rv0082 at 90.322 kb on - strand, within Rv0082 at 90.497 kb on + strand at 90.497 kb on + strand at 90.607 kb on + strand, within Rv0083 at 90.607 kb on + strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.619 kb on + strand, within Rv0083 at 90.620 kb on - strand, within Rv0083 at 90.811 kb on + strand, within Rv0083 at 90.811 kb on + strand, within Rv0083
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 88,631 + Rv0079 0.52 -0.0 88,681 + Rv0079 0.58 +0.7 88,682 - Rv0079 0.58 -0.2 88,732 + Rv0079 0.64 -0.2 88,779 - Rv0079 0.70 -0.4 88,779 - Rv0079 0.70 +1.7 88,954 + -0.4 88,954 + +0.0 89,271 + Rv0080 0.54 +0.2 89,271 + Rv0080 0.54 +1.2 89,272 - Rv0080 0.54 -0.0 89,370 + Rv0080 0.76 +0.6 89,371 - Rv0080 0.76 +0.2 89,471 + -0.1 89,472 - -0.2 89,593 + -1.5 89,594 - -1.2 89,747 + Rv0081 0.50 -0.7 89,917 + +0.5 90,015 + Rv0082 0.19 +0.2 90,101 + Rv0082 0.37 -0.6 90,290 + Rv0082 0.76 +0.7 90,322 - Rv0082 0.83 -0.5 90,497 + +0.3 90,497 + -1.5 90,607 + Rv0083 0.11 +0.1 90,607 + Rv0083 0.11 -0.6 90,608 - Rv0083 0.11 -0.6 90,608 - Rv0083 0.11 -0.8 90,608 - Rv0083 0.11 +0.3 90,619 + Rv0083 0.11 -0.4 90,620 - Rv0083 0.11 -0.0 90,811 + Rv0083 0.21 +1.7 90,811 + Rv0083 0.21 +0.0
Or see this region's nucleotide sequence