Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2698

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2696c and Rv2697c are separated by 74 nucleotidesRv2697c and Rv2698 are separated by 25 nucleotidesRv2698 and Rv2699c are separated by 4 nucleotidesRv2699c and Rv2700 are separated by 237 nucleotides Rv2696c: Rv2696c - Conserved alanine and glycine and valine rich protein, at 3,012,829 to 3,013,608 Rv2696c Rv2697c: Rv2697c - Probable deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (dUTPase) (dUTP pyrophosphatase) (deoxyuridine 5'-triphosphatase) (dUTP diphosphatase) (deoxyuridine-triphosphatase), at 3,013,683 to 3,014,147 Rv2697c Rv2698: Rv2698 - Probable conserved alanine rich transmembrane protein, at 3,014,173 to 3,014,658 Rv2698 Rv2699c: Rv2699c - Conserved hypothetical protein, at 3,014,663 to 3,014,965 Rv2699c Rv2700: Rv2700 - Possible conserved secreted alanine rich protein, at 3,015,203 to 3,015,853 Rv2700 Position (kb) 3014 3015Strain fitness (log2 ratio) -2 -1 0 1 2at 3013.264 kb on - strand, within Rv2696cat 3013.355 kb on - strand, within Rv2696cat 3014.661 kb on + strandat 3014.661 kb on + strandat 3014.662 kb on - strandat 3015.073 kb on - strandat 3015.100 kb on - strandat 3015.100 kb on - strandat 3015.100 kb on - strandat 3015.135 kb on + strandat 3015.136 kb on - strandat 3015.136 kb on - strandat 3015.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,013,264 - Rv2696c 0.56 -2.1
3,013,355 - Rv2696c 0.67 +1.8
3,014,661 + -0.3
3,014,661 + -0.2
3,014,662 - -0.1
3,015,073 - -0.2
3,015,100 - -0.4
3,015,100 - +0.4
3,015,100 - -0.6
3,015,135 + -1.2
3,015,136 - -1.4
3,015,136 - -0.2
3,015,192 - -0.5

Or see this region's nucleotide sequence