Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0399c and Rv0400c are separated by 9 nucleotides Rv0400c and Rv0401 are separated by 35 nucleotides Rv0401 and Rv0402c are separated by 194 nucleotides
Rv0399c: Rv0399c - Possible conserved lipoprotein LpqK, at 477,327 to 478,556
Rv0399c
Rv0400c: Rv0400c - Acyl-CoA dehydrogenase FadE7, at 478,566 to 479,753
Rv0400c
Rv0401: Rv0401 - Probable conserved transmembrane protein, at 479,789 to 480,160
Rv0401
Rv0402c: Rv0402c - Probable conserved transmembrane transport protein MmpL1, at 480,355 to 483,231
Rv0402c
Position (kb) 478
479
480 Strain fitness (log2 ratio) -1
0
1
2 at 477.566 kb on - strand, within Rv0399c at 477.656 kb on - strand, within Rv0399c at 478.152 kb on + strand, within Rv0399c at 478.267 kb on + strand, within Rv0399c at 479.497 kb on + strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c at 479.761 kb on + strand at 480.314 kb on + strand at 480.336 kb on + strand at 480.498 kb on - strand at 480.704 kb on - strand, within Rv0402c
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 477,566 - Rv0399c 0.19 +0.4 477,656 - Rv0399c 0.27 +0.4 478,152 + Rv0399c 0.67 -0.6 478,267 + Rv0399c 0.76 +0.6 479,497 + Rv0400c 0.78 -0.9 479,498 - Rv0400c 0.78 +0.0 479,498 - Rv0400c 0.78 -0.3 479,498 - Rv0400c 0.78 -0.4 479,761 + +0.2 480,314 + -0.0 480,336 + +1.8 480,498 - +1.8 480,704 - Rv0402c 0.12 -0.1
Or see this region's nucleotide sequence