Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0221 and Rv0222 are separated by 30 nucleotides Rv0222 and Rv0223c are separated by 5 nucleotides Rv0223c and Rv0224c are separated by 98 nucleotides Rv0224c and Rv0225 are separated by 35 nucleotides
Rv0221: Rv0221 - Possible triacylglycerol synthase (diacylglycerol acyltransferase), at 264,067 to 265,476
Rv0221
Rv0222: Rv0222 - Probable enoyl-CoA hydratase EchA1 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 265,507 to 266,295
Rv0222
Rv0223c: Rv0223c - Probable aldehyde dehydrogenase, at 266,301 to 267,764
Rv0223c
Rv0224c: Rv0224c - Possible methyltransferase (methylase), at 267,863 to 268,627
Rv0224c
Rv0225: Rv0225 - Possible conserved protein, at 268,663 to 269,817
Rv0225
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 265.315 kb on + strand, within Rv0221 at 265.316 kb on - strand, within Rv0221 at 265.507 kb on - strand at 265.832 kb on - strand, within Rv0222 at 265.976 kb on - strand, within Rv0222 at 266.016 kb on - strand, within Rv0222 at 266.016 kb on - strand, within Rv0222 at 266.152 kb on - strand, within Rv0222 at 266.184 kb on + strand, within Rv0222 at 266.449 kb on + strand, within Rv0223c at 266.527 kb on + strand, within Rv0223c at 266.573 kb on - strand, within Rv0223c at 266.660 kb on + strand, within Rv0223c at 266.740 kb on + strand, within Rv0223c at 266.740 kb on + strand, within Rv0223c at 267.006 kb on + strand, within Rv0223c at 267.080 kb on + strand, within Rv0223c at 267.409 kb on + strand, within Rv0223c at 267.409 kb on + strand, within Rv0223c at 267.658 kb on + strand at 267.659 kb on - strand at 267.682 kb on - strand at 267.764 kb on + strand at 267.764 kb on + strand at 267.765 kb on - strand at 267.765 kb on - strand at 267.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 265,315 + Rv0221 0.89 -1.1 265,316 - Rv0221 0.89 -0.2 265,507 - -0.2 265,832 - Rv0222 0.41 -0.6 265,976 - Rv0222 0.59 -0.2 266,016 - Rv0222 0.65 -0.6 266,016 - Rv0222 0.65 -0.3 266,152 - Rv0222 0.82 -0.1 266,184 + Rv0222 0.86 -0.4 266,449 + Rv0223c 0.10 -0.1 266,527 + Rv0223c 0.15 -0.2 266,573 - Rv0223c 0.19 -0.3 266,660 + Rv0223c 0.25 -0.1 266,740 + Rv0223c 0.30 +0.2 266,740 + Rv0223c 0.30 +0.1 267,006 + Rv0223c 0.48 -2.4 267,080 + Rv0223c 0.53 -0.3 267,409 + Rv0223c 0.76 -0.6 267,409 + Rv0223c 0.76 +0.4 267,658 + -0.3 267,659 - +0.1 267,682 - -0.2 267,764 + +0.6 267,764 + -0.1 267,765 - -0.4 267,765 - -0.2 267,865 - +0.2
Or see this region's nucleotide sequence