Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0285

Experiment: MoLS4 with L-Methionine (10mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0283 and ppiB-1 are separated by 261 nucleotidesppiB-1 and hisH are separated by 187 nucleotideshisH and hisF overlap by 11 nucleotideshisF and DORF26924 are separated by 82 nucleotides DVU0283: DVU0283 - AhpF family protein/thioredoxin reductase (TIGR), at 328,770 to 330,509 DVU0283 DVU0284: ppiB-1 - peptidyl-prolyl cis-trans isomerase B (TIGR), at 330,771 to 331,277 ppiB-1 DVU0285: hisH - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 331,465 to 332,106 hisH DVU0286: hisF - imidazoleglycerol phosphate synthase, cyclase subunit (TIGR), at 332,096 to 332,875 hisF DORF26924: DORF26924 - no description, at 332,958 to 333,728 DORF26924 Position (kb) 331 332 333Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 330.557 kb on - strandat 330.592 kb on - strandat 330.599 kb on + strandat 330.604 kb on + strandat 330.657 kb on + strandat 330.726 kb on - strandat 330.891 kb on - strand, within ppiB-1at 330.910 kb on - strand, within ppiB-1at 330.915 kb on + strand, within ppiB-1at 330.973 kb on + strand, within ppiB-1at 330.989 kb on - strand, within ppiB-1at 331.013 kb on - strand, within ppiB-1at 331.087 kb on - strand, within ppiB-1at 331.109 kb on - strand, within ppiB-1at 331.110 kb on - strand, within ppiB-1at 331.125 kb on + strand, within ppiB-1at 331.131 kb on + strand, within ppiB-1at 331.133 kb on - strand, within ppiB-1at 331.133 kb on - strand, within ppiB-1at 331.196 kb on + strand, within ppiB-1at 331.229 kb on - strandat 331.239 kb on - strandat 331.257 kb on + strandat 331.277 kb on + strandat 331.277 kb on + strandat 331.284 kb on + strandat 331.284 kb on + strandat 331.353 kb on + strandat 331.417 kb on + strandat 331.495 kb on + strandat 331.592 kb on + strand, within hisHat 331.640 kb on - strand, within hisHat 331.655 kb on - strand, within hisHat 331.724 kb on + strand, within hisHat 331.852 kb on + strand, within hisHat 331.852 kb on + strand, within hisHat 331.852 kb on + strand, within hisHat 331.910 kb on - strand, within hisHat 331.910 kb on - strand, within hisHat 331.933 kb on - strand, within hisHat 331.980 kb on - strand, within hisHat 331.985 kb on - strand, within hisHat 331.995 kb on - strand, within hisHat 331.997 kb on + strand, within hisHat 332.004 kb on + strand, within hisHat 332.019 kb on + strand, within hisHat 332.056 kb on - strandat 332.121 kb on + strandat 332.129 kb on - strandat 332.129 kb on - strandat 332.179 kb on - strand, within hisFat 332.219 kb on - strand, within hisFat 332.271 kb on + strand, within hisFat 332.387 kb on + strand, within hisFat 332.458 kb on - strand, within hisFat 332.495 kb on + strand, within hisFat 332.554 kb on + strand, within hisFat 332.609 kb on + strand, within hisFat 332.615 kb on - strand, within hisFat 332.740 kb on + strand, within hisFat 332.755 kb on + strand, within hisF

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (10mM) as nutrient
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330,557 - -0.3
330,592 - -0.8
330,599 + +0.3
330,604 + +0.2
330,657 + -0.6
330,726 - +0.0
330,891 - ppiB-1 DVU0284 0.24 +1.0
330,910 - ppiB-1 DVU0284 0.27 +0.5
330,915 + ppiB-1 DVU0284 0.28 +0.3
330,973 + ppiB-1 DVU0284 0.40 -0.8
330,989 - ppiB-1 DVU0284 0.43 -0.6
331,013 - ppiB-1 DVU0284 0.48 +0.1
331,087 - ppiB-1 DVU0284 0.62 -1.1
331,109 - ppiB-1 DVU0284 0.67 +0.4
331,110 - ppiB-1 DVU0284 0.67 +0.1
331,125 + ppiB-1 DVU0284 0.70 -0.5
331,131 + ppiB-1 DVU0284 0.71 -0.1
331,133 - ppiB-1 DVU0284 0.71 +0.1
331,133 - ppiB-1 DVU0284 0.71 -0.2
331,196 + ppiB-1 DVU0284 0.84 -1.3
331,229 - -0.7
331,239 - -1.0
331,257 + +0.6
331,277 + +0.9
331,277 + +0.3
331,284 + -0.0
331,284 + +0.1
331,353 + -0.8
331,417 + -0.1
331,495 + -2.4
331,592 + hisH DVU0285 0.20 -3.0
331,640 - hisH DVU0285 0.27 -2.1
331,655 - hisH DVU0285 0.30 -3.2
331,724 + hisH DVU0285 0.40 -3.6
331,852 + hisH DVU0285 0.60 -1.4
331,852 + hisH DVU0285 0.60 -3.5
331,852 + hisH DVU0285 0.60 -2.7
331,910 - hisH DVU0285 0.69 -1.7
331,910 - hisH DVU0285 0.69 -2.7
331,933 - hisH DVU0285 0.73 -1.6
331,980 - hisH DVU0285 0.80 -2.4
331,985 - hisH DVU0285 0.81 -3.2
331,995 - hisH DVU0285 0.83 -1.8
331,997 + hisH DVU0285 0.83 -2.4
332,004 + hisH DVU0285 0.84 -3.7
332,019 + hisH DVU0285 0.86 -2.4
332,056 - -2.7
332,121 + -1.7
332,129 - -0.4
332,129 - -3.9
332,179 - hisF DVU0286 0.11 -2.2
332,219 - hisF DVU0286 0.16 -2.4
332,271 + hisF DVU0286 0.22 -2.5
332,387 + hisF DVU0286 0.37 -1.8
332,458 - hisF DVU0286 0.46 -2.7
332,495 + hisF DVU0286 0.51 -2.4
332,554 + hisF DVU0286 0.59 -1.9
332,609 + hisF DVU0286 0.66 -2.9
332,615 - hisF DVU0286 0.67 +0.6
332,740 + hisF DVU0286 0.83 -2.6
332,755 + hisF DVU0286 0.84 -3.2

Or see this region's nucleotide sequence