Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2289

Experiment: MoLS4 with L-Methionine (10mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2287 and DVU2288 are separated by 12 nucleotidesDVU2288 and b2488 are separated by 1 nucleotidesb2488 and DVU2290 overlap by 4 nucleotidesDVU2290 and DVU2291 overlap by 4 nucleotides DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019 DVU2287 DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466 DVU2288 DVU2289: b2488 - hydrogenase, CooX subunit, putative (TIGR), at 2,382,468 to 2,383,103 b2488 DVU2290: DVU2290 - hydrogenase, CooU subunit, putative (TIGR), at 2,383,100 to 2,383,645 DVU2290 DVU2291: DVU2291 - carbon monoxide-induced hydrogenase CooH, putative (TIGR), at 2,383,642 to 2,384,742 DVU2291 Position (kb) 2382 2383 2384Strain fitness (log2 ratio) -2 -1 0 1 2at 2381.490 kb on - strand, within DVU2287at 2381.605 kb on + strand, within DVU2287at 2382.243 kb on - strand, within DVU2288at 2382.750 kb on - strand, within b2488at 2382.926 kb on + strand, within b2488at 2383.041 kb on + strandat 2383.041 kb on + strandat 2383.041 kb on + strandat 2383.116 kb on + strandat 2383.243 kb on + strand, within DVU2290at 2383.365 kb on + strand, within DVU2290at 2383.639 kb on + strandat 2383.775 kb on + strand, within DVU2291at 2383.819 kb on - strand, within DVU2291at 2384.062 kb on + strand, within DVU2291

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (10mM) as nutrient
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2,381,490 - DVU2287 0.45 -1.3
2,381,605 + DVU2287 0.57 -0.2
2,382,243 - DVU2288 0.49 +0.5
2,382,750 - b2488 DVU2289 0.44 -0.1
2,382,926 + b2488 DVU2289 0.72 -1.0
2,383,041 + -0.0
2,383,041 + +0.7
2,383,041 + -0.7
2,383,116 + -2.1
2,383,243 + DVU2290 0.26 -0.5
2,383,365 + DVU2290 0.49 -0.2
2,383,639 + -0.4
2,383,775 + DVU2291 0.12 -0.1
2,383,819 - DVU2291 0.16 +1.9
2,384,062 + DVU2291 0.38 -0.3

Or see this region's nucleotide sequence