Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1813

Experiment: MoLS4 with L-Methionine (10mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcoxB and DVU1813 are separated by 9 nucleotidesDVU1813 and DVU1814 are separated by 8 nucleotidesDVU1814 and DVU1815 are separated by 10 nucleotides DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967 coxB DVU1813: DVU1813 - hypothetical protein (TIGR), at 1,877,977 to 1,878,270 DVU1813 DVU1814: DVU1814 - cytochrome c oxidase, subunit III, putative (TIGR), at 1,878,279 to 1,878,890 DVU1814 DVU1815: DVU1815 - cytochrome c oxidase, subunit I, putative (TIGR), at 1,878,901 to 1,880,526 DVU1815 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1at 1877.015 kb on + strand, within coxBat 1877.028 kb on - strand, within coxBat 1877.114 kb on - strand, within coxBat 1877.165 kb on + strand, within coxBat 1877.165 kb on + strand, within coxBat 1877.188 kb on + strand, within coxBat 1877.260 kb on + strand, within coxBat 1877.263 kb on - strand, within coxBat 1877.268 kb on - strand, within coxBat 1877.348 kb on + strand, within coxBat 1877.489 kb on + strand, within coxBat 1877.499 kb on + strand, within coxBat 1877.514 kb on - strand, within coxBat 1877.549 kb on + strand, within coxBat 1877.663 kb on + strand, within coxBat 1877.769 kb on - strand, within coxBat 1877.787 kb on - strand, within coxBat 1877.858 kb on + strandat 1877.866 kb on - strandat 1877.866 kb on - strandat 1877.866 kb on - strandat 1877.983 kb on - strandat 1878.064 kb on + strand, within DVU1813at 1878.104 kb on - strand, within DVU1813at 1878.239 kb on - strand, within DVU1813at 1878.241 kb on - strandat 1878.265 kb on + strandat 1878.523 kb on - strand, within DVU1814at 1878.671 kb on + strand, within DVU1814at 1878.711 kb on + strand, within DVU1814at 1878.717 kb on - strand, within DVU1814at 1878.717 kb on - strand, within DVU1814at 1878.859 kb on + strandat 1878.871 kb on - strandat 1878.967 kb on + strandat 1879.133 kb on + strand, within DVU1815at 1879.141 kb on - strand, within DVU1815at 1879.141 kb on - strand, within DVU1815at 1879.153 kb on + strand, within DVU1815at 1879.162 kb on - strand, within DVU1815

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (10mM) as nutrient
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1,877,015 + coxB DVU1812 0.26 +0.1
1,877,028 - coxB DVU1812 0.27 +0.8
1,877,114 - coxB DVU1812 0.33 +0.0
1,877,165 + coxB DVU1812 0.37 -2.0
1,877,165 + coxB DVU1812 0.37 -0.8
1,877,188 + coxB DVU1812 0.39 +0.2
1,877,260 + coxB DVU1812 0.45 -0.8
1,877,263 - coxB DVU1812 0.45 -0.2
1,877,268 - coxB DVU1812 0.45 +0.0
1,877,348 + coxB DVU1812 0.52 -1.0
1,877,489 + coxB DVU1812 0.63 +0.1
1,877,499 + coxB DVU1812 0.63 +0.5
1,877,514 - coxB DVU1812 0.65 +0.4
1,877,549 + coxB DVU1812 0.67 -0.0
1,877,663 + coxB DVU1812 0.76 -0.2
1,877,769 - coxB DVU1812 0.84 +0.3
1,877,787 - coxB DVU1812 0.86 -0.2
1,877,858 + +0.2
1,877,866 - -0.2
1,877,866 - -0.5
1,877,866 - +0.3
1,877,983 - -0.6
1,878,064 + DVU1813 0.30 -0.1
1,878,104 - DVU1813 0.43 -1.3
1,878,239 - DVU1813 0.89 -1.3
1,878,241 - -0.0
1,878,265 + -1.2
1,878,523 - DVU1814 0.40 -1.1
1,878,671 + DVU1814 0.64 -0.3
1,878,711 + DVU1814 0.71 -0.7
1,878,717 - DVU1814 0.72 +1.1
1,878,717 - DVU1814 0.72 -0.1
1,878,859 + -0.4
1,878,871 - +0.0
1,878,967 + +0.3
1,879,133 + DVU1815 0.14 -1.1
1,879,141 - DVU1815 0.15 +0.1
1,879,141 - DVU1815 0.15 +0.2
1,879,153 + DVU1815 0.15 -0.5
1,879,162 - DVU1815 0.16 +0.0

Or see this region's nucleotide sequence