Experiment: MoLS4 with L-Methionine (10mM) as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1611 and DVU1612 are separated by 280 nucleotides DVU1612 and DVU1613 are separated by 221 nucleotides DVU1613 and DVU1614 are separated by 13 nucleotides DVU1614 and paaK-2 are separated by 411 nucleotides
DVU1611: DVU1611 - molybdopterin oxidoreductase domain protein (TIGR), at 1,695,875 to 1,697,803
DVU1611
DVU1612: DVU1612 - ACT domain protein (TIGR), at 1,698,084 to 1,698,515
DVU1612
DVU1613: DVU1613 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 1,698,737 to 1,699,795
DVU1613
DVU1614: DVU1614 - iron-sulfur cluster-binding protein (TIGR), at 1,699,809 to 1,700,339
DVU1614
DVU1615: paaK-2 - phenylacetate-coenzyme A ligase (TIGR), at 1,700,751 to 1,702,058
paaK-2
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-2
-1
0
1 at 1697.757 kb on - strand at 1697.781 kb on - strand at 1697.786 kb on + strand at 1697.786 kb on + strand at 1697.794 kb on - strand at 1697.794 kb on - strand at 1697.836 kb on - strand at 1697.988 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.081 kb on + strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.155 kb on - strand, within DVU1612 at 1698.160 kb on - strand, within DVU1612 at 1698.214 kb on + strand, within DVU1612 at 1698.250 kb on - strand, within DVU1612 at 1698.330 kb on - strand, within DVU1612 at 1698.330 kb on - strand, within DVU1612 at 1698.346 kb on + strand, within DVU1612 at 1698.553 kb on - strand at 1698.633 kb on - strand at 1698.674 kb on - strand at 1698.674 kb on - strand at 1698.674 kb on - strand at 1698.674 kb on - strand at 1698.674 kb on - strand at 1698.913 kb on - strand, within DVU1613 at 1699.015 kb on + strand, within DVU1613 at 1699.023 kb on - strand, within DVU1613 at 1699.058 kb on - strand, within DVU1613 at 1699.095 kb on - strand, within DVU1613 at 1699.096 kb on + strand, within DVU1613 at 1699.104 kb on - strand, within DVU1613 at 1699.258 kb on + strand, within DVU1613 at 1699.278 kb on - strand, within DVU1613 at 1699.290 kb on - strand, within DVU1613 at 1699.316 kb on - strand, within DVU1613 at 1699.333 kb on + strand, within DVU1613 at 1699.341 kb on - strand, within DVU1613 at 1699.341 kb on - strand, within DVU1613 at 1699.393 kb on - strand, within DVU1613 at 1699.413 kb on + strand, within DVU1613 at 1699.463 kb on + strand, within DVU1613 at 1699.624 kb on - strand, within DVU1613 at 1699.829 kb on + strand at 1699.829 kb on + strand at 1699.829 kb on + strand at 1699.853 kb on + strand at 1699.950 kb on - strand, within DVU1614 at 1699.950 kb on - strand, within DVU1614 at 1699.995 kb on - strand, within DVU1614 at 1699.995 kb on - strand, within DVU1614 at 1700.048 kb on - strand, within DVU1614 at 1700.116 kb on + strand, within DVU1614 at 1700.121 kb on + strand, within DVU1614 at 1700.188 kb on + strand, within DVU1614 at 1700.222 kb on - strand, within DVU1614 at 1700.311 kb on - strand at 1700.336 kb on - strand at 1700.424 kb on - strand at 1700.616 kb on - strand at 1700.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (10mM) as nutrient remove 1,697,757 - -0.5 1,697,781 - +0.4 1,697,786 + +0.7 1,697,786 + -0.3 1,697,794 - -0.1 1,697,794 - +0.8 1,697,836 - -0.1 1,697,988 + -0.1 1,698,081 + -2.2 1,698,081 + -0.2 1,698,081 + -0.3 1,698,081 + -0.8 1,698,081 + +1.1 1,698,081 + +0.5 1,698,081 + +0.4 1,698,081 + +0.5 1,698,081 + +0.3 1,698,081 + +0.3 1,698,089 - +0.9 1,698,089 - -0.5 1,698,089 - +0.6 1,698,089 - +0.6 1,698,089 - -0.6 1,698,089 - -0.4 1,698,089 - +0.8 1,698,089 - +0.3 1,698,089 - -0.5 1,698,089 - +0.5 1,698,089 - +0.3 1,698,089 - +0.6 1,698,155 - DVU1612 0.16 +0.4 1,698,160 - DVU1612 0.18 +0.5 1,698,214 + DVU1612 0.30 -0.3 1,698,250 - DVU1612 0.38 +0.8 1,698,330 - DVU1612 0.57 -1.0 1,698,330 - DVU1612 0.57 -0.3 1,698,346 + DVU1612 0.61 -0.0 1,698,553 - +1.3 1,698,633 - -0.2 1,698,674 - -0.2 1,698,674 - -0.1 1,698,674 - +1.5 1,698,674 - -0.1 1,698,674 - -0.5 1,698,913 - DVU1613 0.17 -2.3 1,699,015 + DVU1613 0.26 -1.0 1,699,023 - DVU1613 0.27 -1.1 1,699,058 - DVU1613 0.30 -2.1 1,699,095 - DVU1613 0.34 -1.3 1,699,096 + DVU1613 0.34 -1.1 1,699,104 - DVU1613 0.35 -0.5 1,699,258 + DVU1613 0.49 -2.1 1,699,278 - DVU1613 0.51 -0.6 1,699,290 - DVU1613 0.52 -0.3 1,699,316 - DVU1613 0.55 -0.3 1,699,333 + DVU1613 0.56 -0.6 1,699,341 - DVU1613 0.57 -1.2 1,699,341 - DVU1613 0.57 +0.0 1,699,393 - DVU1613 0.62 -1.4 1,699,413 + DVU1613 0.64 -0.4 1,699,463 + DVU1613 0.69 -1.4 1,699,624 - DVU1613 0.84 -0.4 1,699,829 + +0.1 1,699,829 + -1.8 1,699,829 + -0.7 1,699,853 + -1.4 1,699,950 - DVU1614 0.27 -1.3 1,699,950 - DVU1614 0.27 -0.9 1,699,995 - DVU1614 0.35 -1.6 1,699,995 - DVU1614 0.35 -0.6 1,700,048 - DVU1614 0.45 +0.5 1,700,116 + DVU1614 0.58 -1.3 1,700,121 + DVU1614 0.59 -1.0 1,700,188 + DVU1614 0.71 +0.0 1,700,222 - DVU1614 0.78 -0.3 1,700,311 - -0.8 1,700,336 - -1.4 1,700,424 - +0.1 1,700,616 - +0.1 1,700,755 + +0.2
Or see this region's nucleotide sequence