Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1255

Experiment: MoLS4 with L-Methionine (10mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1253 and DVU1254 are separated by 38 nucleotidesDVU1254 and DVU1255 are separated by 352 nucleotidesDVU1255 and DVU1256 are separated by 108 nucleotides DVU1253: DVU1253 - hypothetical protein (TIGR), at 1,340,271 to 1,340,399 DVU1253 DVU1254: DVU1254 - conserved hypothetical protein (TIGR), at 1,340,438 to 1,340,908 DVU1254 DVU1255: DVU1255 - Sua5/YciO/YrdC/YwlC family protein (TIGR), at 1,341,261 to 1,341,893 DVU1255 DVU1256: DVU1256 - heptosyltransferase family protein (TIGR), at 1,342,002 to 1,342,979 DVU1256 Position (kb) 1341 1342Strain fitness (log2 ratio) -1 0 1at 1340.280 kb on - strandat 1340.295 kb on + strand, within DVU1253at 1340.337 kb on - strand, within DVU1253at 1340.342 kb on + strand, within DVU1253at 1340.443 kb on + strandat 1340.467 kb on + strandat 1340.467 kb on + strandat 1340.483 kb on + strandat 1340.486 kb on - strand, within DVU1254at 1340.574 kb on + strand, within DVU1254at 1340.584 kb on + strand, within DVU1254at 1340.689 kb on + strand, within DVU1254at 1340.817 kb on - strand, within DVU1254at 1340.817 kb on - strand, within DVU1254at 1340.829 kb on - strand, within DVU1254at 1340.840 kb on - strand, within DVU1254at 1340.842 kb on - strand, within DVU1254at 1340.901 kb on + strandat 1340.903 kb on + strandat 1340.909 kb on - strandat 1340.909 kb on - strandat 1340.911 kb on - strandat 1340.956 kb on - strandat 1340.966 kb on - strandat 1340.966 kb on - strandat 1341.012 kb on - strandat 1341.093 kb on + strandat 1341.166 kb on - strandat 1341.829 kb on + strand, within DVU1255at 1341.919 kb on + strandat 1341.933 kb on + strandat 1342.049 kb on - strandat 1342.154 kb on - strand, within DVU1256at 1342.154 kb on - strand, within DVU1256at 1342.154 kb on - strand, within DVU1256at 1342.229 kb on + strand, within DVU1256at 1342.248 kb on + strand, within DVU1256at 1342.384 kb on + strand, within DVU1256at 1342.445 kb on + strand, within DVU1256at 1342.549 kb on - strand, within DVU1256at 1342.596 kb on + strand, within DVU1256at 1342.606 kb on + strand, within DVU1256at 1342.639 kb on - strand, within DVU1256at 1342.704 kb on - strand, within DVU1256at 1342.732 kb on + strand, within DVU1256at 1342.732 kb on + strand, within DVU1256at 1342.824 kb on + strand, within DVU1256at 1342.838 kb on + strand, within DVU1256

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (10mM) as nutrient
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1,340,280 - -0.4
1,340,295 + DVU1253 0.19 -1.0
1,340,337 - DVU1253 0.51 +0.2
1,340,342 + DVU1253 0.55 -0.2
1,340,443 + -0.6
1,340,467 + -0.3
1,340,467 + -1.5
1,340,483 + -0.1
1,340,486 - DVU1254 0.10 -1.0
1,340,574 + DVU1254 0.29 +0.5
1,340,584 + DVU1254 0.31 -0.2
1,340,689 + DVU1254 0.53 +0.5
1,340,817 - DVU1254 0.80 -0.1
1,340,817 - DVU1254 0.80 -0.1
1,340,829 - DVU1254 0.83 +1.1
1,340,840 - DVU1254 0.85 +0.4
1,340,842 - DVU1254 0.86 -0.2
1,340,901 + -0.6
1,340,903 + -1.3
1,340,909 - -0.1
1,340,909 - +0.3
1,340,911 - -0.5
1,340,956 - -0.7
1,340,966 - -0.3
1,340,966 - -0.9
1,341,012 - -0.6
1,341,093 + -0.7
1,341,166 - -1.5
1,341,829 + DVU1255 0.90 -1.3
1,341,919 + +0.0
1,341,933 + -0.2
1,342,049 - -1.5
1,342,154 - DVU1256 0.16 -0.7
1,342,154 - DVU1256 0.16 -0.4
1,342,154 - DVU1256 0.16 +0.3
1,342,229 + DVU1256 0.23 +0.0
1,342,248 + DVU1256 0.25 +1.6
1,342,384 + DVU1256 0.39 -0.0
1,342,445 + DVU1256 0.45 -0.6
1,342,549 - DVU1256 0.56 -0.9
1,342,596 + DVU1256 0.61 -1.2
1,342,606 + DVU1256 0.62 -0.8
1,342,639 - DVU1256 0.65 -0.9
1,342,704 - DVU1256 0.72 -0.3
1,342,732 + DVU1256 0.75 -0.5
1,342,732 + DVU1256 0.75 -1.7
1,342,824 + DVU1256 0.84 +0.2
1,342,838 + DVU1256 0.85 -0.5

Or see this region's nucleotide sequence