Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3650

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3649 and Rv3650 are separated by 136 nucleotidesRv3650 and Rv3651 are separated by 323 nucleotides Rv3649: Rv3649 - Probable helicase, at 4,088,781 to 4,091,096 Rv3649 Rv3650: Rv3650 - PE family protein PE33, at 4,091,233 to 4,091,517 Rv3650 Rv3651: Rv3651 - Conserved hypothetical protein, at 4,091,841 to 4,092,878 Rv3651 Position (kb) 4091 4092Strain fitness (log2 ratio) -1 0 1at 4090.243 kb on - strand, within Rv3649at 4091.189 kb on - strandat 4091.417 kb on - strand, within Rv3650at 4091.571 kb on + strandat 4091.572 kb on - strandat 4091.605 kb on + strandat 4091.606 kb on - strandat 4092.061 kb on + strand, within Rv3651at 4092.061 kb on + strand, within Rv3651

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,090,243 - Rv3649 0.63 +0.0
4,091,189 - +0.1
4,091,417 - Rv3650 0.65 -1.1
4,091,571 + -0.1
4,091,572 - +0.4
4,091,605 + -1.4
4,091,606 - +1.1
4,092,061 + Rv3651 0.21 +1.4
4,092,061 + Rv3651 0.21 -0.6

Or see this region's nucleotide sequence