Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1798

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1797 and Rv1798 overlap by 4 nucleotidesRv1798 and Rv1799 are separated by 626 nucleotidesRv1799 and Rv1800 are separated by 102 nucleotides Rv1797: Rv1797 - ESX conserved component EccE5. ESX-5 type VII secretion system protein. Probable membrane protein., at 2,035,483 to 2,036,703 Rv1797 Rv1798: Rv1798 - ESX conserved component EccA5. ESX-5 type VII secretion system protein., at 2,036,700 to 2,038,532 Rv1798 Rv1799: Rv1799 - Probable lipoprotein LppT, at 2,039,159 to 2,039,350 Rv1799 Rv1800: Rv1800 - PPE family protein PPE28, at 2,039,453 to 2,041,420 Rv1800 Position (kb) 2036 2037 2038 2039Strain fitness (log2 ratio) -2 -1 0 1at 2038.263 kb on - strand, within Rv1798at 2038.273 kb on - strand, within Rv1798at 2038.531 kb on - strandat 2038.559 kb on + strandat 2038.559 kb on + strandat 2038.767 kb on + strandat 2039.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,038,263 - Rv1798 0.85 -2.1
2,038,273 - Rv1798 0.86 -2.4
2,038,531 - -0.4
2,038,559 + +1.1
2,038,559 + -0.5
2,038,767 + -0.1
2,039,371 - -0.7

Or see this region's nucleotide sequence