Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0874c and Rv0875c are separated by 99 nucleotides Rv0875c and Rv0876c overlap by 4 nucleotides Rv0876c and Rv0877 are separated by 137 nucleotides Rv0877 and Rv0878c are separated by 8 nucleotides
Rv0874c: Rv0874c - Conserved hypothetical protein, at 972,546 to 973,706
Rv0874c
Rv0875c: Rv0875c - Possible conserved exported protein, at 973,806 to 974,294
Rv0875c
Rv0876c: Rv0876c - Possible conserved transmembrane protein, at 974,291 to 975,937
Rv0876c
Rv0877: Rv0877 - Conserved hypothetical protein, at 976,075 to 976,863
Rv0877
Rv0878c: Rv0878c - PPE family protein PPE13, at 976,872 to 978,203
Rv0878c
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.464 kb on - strand, within Rv0876c at 974.464 kb on - strand, within Rv0876c at 974.851 kb on - strand, within Rv0876c at 975.746 kb on - strand, within Rv0876c at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 976.045 kb on - strand at 976.045 kb on - strand at 976.058 kb on + strand at 976.214 kb on - strand, within Rv0877 at 976.315 kb on + strand, within Rv0877 at 976.316 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.604 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.751 kb on - strand, within Rv0877 at 976.807 kb on + strand at 976.808 kb on - strand at 976.816 kb on + strand at 976.817 kb on - strand at 976.817 kb on - strand at 976.861 kb on + strand at 976.861 kb on + strand at 976.862 kb on - strand at 976.862 kb on - strand at 976.932 kb on + strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 974,464 - Rv0876c 0.11 -1.0 974,464 - Rv0876c 0.11 -0.3 974,851 - Rv0876c 0.34 -3.1 975,746 - Rv0876c 0.88 -1.5 975,850 - -0.2 975,850 - -0.3 975,850 - +0.3 975,850 - -0.0 975,850 - +0.1 975,871 - +0.6 975,871 - -2.2 975,871 - -0.3 976,045 - +0.0 976,045 - -0.5 976,058 + -0.6 976,214 - Rv0877 0.18 -0.3 976,315 + Rv0877 0.30 -0.3 976,316 - Rv0877 0.31 -0.1 976,369 - Rv0877 0.37 -0.5 976,369 - Rv0877 0.37 +1.9 976,603 + Rv0877 0.67 -0.4 976,603 + Rv0877 0.67 -1.8 976,603 + Rv0877 0.67 -1.7 976,604 - Rv0877 0.67 -1.1 976,621 - Rv0877 0.69 -1.8 976,621 - Rv0877 0.69 -0.7 976,621 - Rv0877 0.69 -0.7 976,621 - Rv0877 0.69 -1.3 976,621 - Rv0877 0.69 -1.3 976,703 + Rv0877 0.80 -0.9 976,703 + Rv0877 0.80 -0.7 976,704 - Rv0877 0.80 -0.3 976,704 - Rv0877 0.80 +0.9 976,704 - Rv0877 0.80 -1.1 976,704 - Rv0877 0.80 -0.3 976,704 - Rv0877 0.80 -0.4 976,751 - Rv0877 0.86 -0.2 976,807 + -0.8 976,808 - -1.1 976,816 + -1.5 976,817 - -1.1 976,817 - -0.2 976,861 + -0.2 976,861 + -0.2 976,862 - +0.4 976,862 - +1.9 976,932 + +0.0 976,933 - +1.9 976,933 - +0.3 976,933 - -1.1
Or see this region's nucleotide sequence