Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0869c and Rv0870c overlap by 4 nucleotides Rv0870c and Rv0871 are separated by 164 nucleotides Rv0871 and Rv0872c are separated by 118 nucleotides
Rv0869c: Rv0869c - Probable molybdenum cofactor biosynthesis protein A2 MoaA2, at 966,265 to 967,347
Rv0869c
Rv0870c: Rv0870c - Possible conserved integral membrane protein, at 967,344 to 967,733
Rv0870c
Rv0871: Rv0871 - Probable cold shock-like protein B CspB, at 967,898 to 968,305
Rv0871
Rv0872c: Rv0872c - PE-PGRS family protein PE_PGRS15, at 968,424 to 970,244
Rv0872c
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2 at 966.898 kb on - strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.185 kb on - strand, within Rv0869c at 967.276 kb on + strand at 967.431 kb on + strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.713 kb on - strand at 967.748 kb on + strand at 967.773 kb on + strand at 967.774 kb on - strand at 967.806 kb on + strand at 967.807 kb on - strand at 967.923 kb on - strand at 967.923 kb on - strand at 967.977 kb on - strand, within Rv0871 at 967.977 kb on - strand, within Rv0871 at 969.261 kb on + strand, within Rv0872c at 969.262 kb on - strand, within Rv0872c
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 966,898 - Rv0869c 0.58 -0.9 967,008 + Rv0869c 0.69 +0.3 967,008 + Rv0869c 0.69 +0.2 967,008 + Rv0869c 0.69 +0.9 967,008 + Rv0869c 0.69 +0.3 967,009 - Rv0869c 0.69 -0.5 967,009 - Rv0869c 0.69 +0.8 967,009 - Rv0869c 0.69 +1.9 967,109 - Rv0869c 0.78 -0.3 967,109 - Rv0869c 0.78 -0.0 967,184 + Rv0869c 0.85 -0.1 967,184 + Rv0869c 0.85 -0.9 967,185 - Rv0869c 0.85 +0.5 967,276 + +0.3 967,431 + Rv0870c 0.22 -0.1 967,673 - Rv0870c 0.84 -0.3 967,673 - Rv0870c 0.84 -0.4 967,713 - -1.0 967,748 + +0.4 967,773 + -0.0 967,774 - -0.7 967,806 + +0.2 967,807 - -1.5 967,923 - -0.2 967,923 - +0.9 967,977 - Rv0871 0.19 -0.7 967,977 - Rv0871 0.19 -2.2 969,261 + Rv0872c 0.46 -0.2 969,262 - Rv0872c 0.46 -0.2
Or see this region's nucleotide sequence