Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0654 and Rv0655 are separated by 11 nucleotides Rv0655 and Rv0656c are separated by 387 nucleotides Rv0656c and Rv0657c are separated by 94 nucleotides
Rv0654: Rv0654 - Probable dioxygenase, at 750,000 to 751,505
Rv0654
Rv0655: Rv0655 - Possible ribonucleotide-transport ATP-binding protein ABC transporter Mkl, at 751,517 to 752,596
Rv0655
Rv0656c: Rv0656c - Possible toxin VapC6, at 752,984 to 753,367
Rv0656c
Rv0657c: Rv0657c - Possible antitoxin VapB6, at 753,462 to 753,617
Rv0657c
Position (kb) 751
752
753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 750.528 kb on + strand, within Rv0654 at 750.529 kb on - strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.667 kb on - strand, within Rv0654 at 750.838 kb on - strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.954 kb on + strand, within Rv0654 at 750.955 kb on - strand, within Rv0654 at 751.182 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.246 kb on - strand, within Rv0654 at 751.247 kb on + strand, within Rv0654 at 751.248 kb on - strand, within Rv0654 at 751.615 kb on - strand at 751.814 kb on + strand, within Rv0655 at 751.814 kb on + strand, within Rv0655 at 751.881 kb on - strand, within Rv0655 at 752.023 kb on + strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.269 kb on - strand, within Rv0655 at 752.594 kb on + strand at 752.595 kb on - strand at 752.647 kb on - strand at 752.659 kb on - strand at 752.730 kb on + strand at 752.730 kb on + strand at 752.731 kb on - strand at 752.731 kb on - strand at 752.731 kb on - strand at 752.731 kb on - strand at 752.764 kb on - strand at 752.986 kb on - strand at 753.048 kb on + strand, within Rv0656c at 753.071 kb on + strand, within Rv0656c at 753.072 kb on - strand, within Rv0656c at 753.072 kb on - strand, within Rv0656c at 753.074 kb on + strand, within Rv0656c at 753.074 kb on + strand, within Rv0656c at 753.074 kb on + strand, within Rv0656c at 753.074 kb on + strand, within Rv0656c at 753.074 kb on + strand, within Rv0656c at 753.075 kb on - strand, within Rv0656c at 753.211 kb on - strand, within Rv0656c at 753.211 kb on - strand, within Rv0656c at 753.445 kb on + strand at 753.446 kb on - strand at 753.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 750,528 + Rv0654 0.35 +0.1 750,529 - Rv0654 0.35 +0.2 750,654 + Rv0654 0.43 -0.5 750,654 + Rv0654 0.43 -1.2 750,654 + Rv0654 0.43 -0.1 750,654 + Rv0654 0.43 +0.2 750,654 + Rv0654 0.43 -1.4 750,655 - Rv0654 0.43 -0.2 750,655 - Rv0654 0.43 -0.5 750,667 - Rv0654 0.44 -0.9 750,838 - Rv0654 0.56 -0.1 750,930 + Rv0654 0.62 +0.4 750,930 + Rv0654 0.62 -0.2 750,930 + Rv0654 0.62 +0.1 750,934 + Rv0654 0.62 -0.6 750,934 + Rv0654 0.62 -0.1 750,934 + Rv0654 0.62 -0.3 750,934 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 +0.3 750,934 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 -0.1 750,935 - Rv0654 0.62 +0.3 750,935 - Rv0654 0.62 -0.3 750,935 - Rv0654 0.62 +1.8 750,935 - Rv0654 0.62 -0.3 750,936 + Rv0654 0.62 +0.3 750,936 + Rv0654 0.62 -0.3 750,937 - Rv0654 0.62 +0.9 750,937 - Rv0654 0.62 -0.2 750,937 - Rv0654 0.62 +0.6 750,947 + Rv0654 0.63 +0.8 750,947 + Rv0654 0.63 +1.8 750,948 - Rv0654 0.63 -0.0 750,948 - Rv0654 0.63 +0.0 750,948 - Rv0654 0.63 -0.3 750,948 - Rv0654 0.63 -0.6 750,954 + Rv0654 0.63 +0.1 750,955 - Rv0654 0.63 -0.3 751,182 + Rv0654 0.78 +1.8 751,245 + Rv0654 0.83 +0.1 751,245 + Rv0654 0.83 +0.8 751,246 - Rv0654 0.83 -0.2 751,247 + Rv0654 0.83 +0.2 751,248 - Rv0654 0.83 -0.0 751,615 - -2.4 751,814 + Rv0655 0.28 +0.8 751,814 + Rv0655 0.28 -0.4 751,881 - Rv0655 0.34 -2.2 752,023 + Rv0655 0.47 -1.0 752,024 - Rv0655 0.47 -1.8 752,024 - Rv0655 0.47 -2.0 752,268 + Rv0655 0.70 +0.3 752,268 + Rv0655 0.70 -0.5 752,268 + Rv0655 0.70 +0.0 752,269 - Rv0655 0.70 -1.3 752,594 + -0.3 752,595 - +0.3 752,647 - +0.3 752,659 - +0.2 752,730 + +0.3 752,730 + -0.1 752,731 - -0.1 752,731 - -0.3 752,731 - -0.9 752,731 - -0.6 752,764 - -1.4 752,986 - -0.4 753,048 + Rv0656c 0.17 -0.9 753,071 + Rv0656c 0.23 -0.4 753,072 - Rv0656c 0.23 +0.4 753,072 - Rv0656c 0.23 -0.5 753,074 + Rv0656c 0.23 +0.1 753,074 + Rv0656c 0.23 -0.6 753,074 + Rv0656c 0.23 -1.0 753,074 + Rv0656c 0.23 +0.0 753,074 + Rv0656c 0.23 -0.4 753,075 - Rv0656c 0.24 +0.2 753,211 - Rv0656c 0.59 +0.3 753,211 - Rv0656c 0.59 -0.0 753,445 + +0.6 753,446 - -0.3 753,446 - -1.4
Or see this region's nucleotide sequence