Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0496 and Rv0497 overlap by 4 nucleotides Rv0497 and Rv0498 are separated by 15 nucleotides Rv0498 and Rv0499 are separated by 15 nucleotides
Rv0496: Rv0496 - Conserved hypothetical protein, at 586,394 to 587,380
Rv0496
Rv0497: Rv0497 - Probable conserved transmembrane protein, at 587,377 to 588,309
Rv0497
Rv0498: Rv0498 - Conserved hypothetical protein, at 588,325 to 589,167
Rv0498
Rv0499: Rv0499 - Conserved hypothetical protein, at 589,183 to 590,058
Rv0499
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1
2 at 587.001 kb on + strand, within Rv0496 at 587.049 kb on + strand, within Rv0496 at 587.084 kb on - strand, within Rv0496 at 587.084 kb on - strand, within Rv0496 at 587.090 kb on - strand, within Rv0496 at 587.199 kb on + strand, within Rv0496 at 587.200 kb on - strand, within Rv0496 at 588.155 kb on + strand, within Rv0497 at 588.155 kb on + strand, within Rv0497 at 588.164 kb on + strand, within Rv0497 at 588.170 kb on + strand, within Rv0497 at 588.689 kb on + strand, within Rv0498 at 588.690 kb on - strand, within Rv0498 at 588.690 kb on - strand, within Rv0498 at 588.786 kb on + strand, within Rv0498 at 588.786 kb on + strand, within Rv0498 at 588.787 kb on - strand, within Rv0498 at 588.787 kb on - strand, within Rv0498 at 588.835 kb on + strand, within Rv0498 at 588.835 kb on + strand, within Rv0498 at 588.836 kb on - strand, within Rv0498 at 588.866 kb on - strand, within Rv0498 at 588.866 kb on - strand, within Rv0498 at 589.169 kb on - strand at 589.182 kb on + strand at 589.182 kb on + strand at 589.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 587,001 + Rv0496 0.61 -0.0 587,049 + Rv0496 0.66 +0.7 587,084 - Rv0496 0.70 -1.3 587,084 - Rv0496 0.70 -1.0 587,090 - Rv0496 0.71 -0.2 587,199 + Rv0496 0.82 -0.7 587,200 - Rv0496 0.82 +0.1 588,155 + Rv0497 0.83 -0.8 588,155 + Rv0497 0.83 -1.1 588,164 + Rv0497 0.84 -1.3 588,170 + Rv0497 0.85 +1.8 588,689 + Rv0498 0.43 -0.6 588,690 - Rv0498 0.43 -1.4 588,690 - Rv0498 0.43 -1.3 588,786 + Rv0498 0.55 -0.1 588,786 + Rv0498 0.55 +2.4 588,787 - Rv0498 0.55 -0.7 588,787 - Rv0498 0.55 -0.4 588,835 + Rv0498 0.60 -0.3 588,835 + Rv0498 0.60 -0.4 588,836 - Rv0498 0.61 +0.3 588,866 - Rv0498 0.64 +0.0 588,866 - Rv0498 0.64 -1.4 589,169 - -0.9 589,182 + -0.3 589,182 + -0.5 589,183 - +0.4
Or see this region's nucleotide sequence