Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0450c and Rv0451c overlap by 4 nucleotides Rv0451c and Rv0452 are separated by 231 nucleotides Rv0452 and Rv0453 are separated by 321 nucleotides
Rv0450c: Rv0450c - Probable conserved transmembrane transport protein MmpL4, at 538,588 to 541,491
Rv0450c
Rv0451c: Rv0451c - Probable conserved membrane protein MmpS4, at 541,488 to 541,910
Rv0451c
Rv0452: Rv0452 - Possible transcriptional regulatory protein, at 542,142 to 542,852
Rv0452
Rv0453: Rv0453 - PPE family protein PPE11, at 543,174 to 544,730
Rv0453
Position (kb) 542
543 Strain fitness (log2 ratio) -2
-1
0
1 at 541.510 kb on + strand at 541.644 kb on - strand, within Rv0451c at 541.801 kb on + strand, within Rv0451c at 541.905 kb on + strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.995 kb on + strand at 541.995 kb on + strand at 541.996 kb on - strand at 542.009 kb on + strand at 542.038 kb on - strand at 542.038 kb on - strand at 542.059 kb on + strand at 542.059 kb on + strand at 542.060 kb on - strand at 542.079 kb on - strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.108 kb on - strand at 542.399 kb on - strand, within Rv0452 at 542.582 kb on - strand, within Rv0452 at 542.658 kb on + strand, within Rv0452 at 542.719 kb on - strand, within Rv0452 at 543.071 kb on + strand at 543.072 kb on - strand at 543.072 kb on - strand at 543.072 kb on - strand at 543.084 kb on + strand at 543.108 kb on + strand at 543.173 kb on + strand at 543.173 kb on + strand at 543.174 kb on - strand at 543.174 kb on - strand at 543.191 kb on - strand at 543.191 kb on - strand at 543.233 kb on + strand at 543.297 kb on + strand at 543.399 kb on + strand, within Rv0453 at 543.577 kb on + strand, within Rv0453 at 543.577 kb on + strand, within Rv0453 at 543.578 kb on - strand, within Rv0453 at 543.604 kb on - strand, within Rv0453 at 543.646 kb on - strand, within Rv0453 at 543.746 kb on + strand, within Rv0453 at 543.747 kb on - strand, within Rv0453
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 541,510 + -0.5 541,644 - Rv0451c 0.37 -0.1 541,801 + Rv0451c 0.74 -0.8 541,905 + +0.3 541,906 - -0.1 541,906 - +0.5 541,906 - +0.2 541,995 + -1.0 541,995 + -0.2 541,996 - +0.4 542,009 + -0.7 542,038 - -1.0 542,038 - -0.2 542,059 + -1.3 542,059 + +0.4 542,060 - +0.0 542,079 - -1.0 542,107 + +0.3 542,107 + +0.4 542,107 + -0.0 542,107 + -1.5 542,107 + +0.1 542,107 + -1.1 542,107 + +0.2 542,108 - +0.3 542,399 - Rv0452 0.36 -1.4 542,582 - Rv0452 0.62 -0.7 542,658 + Rv0452 0.73 -0.6 542,719 - Rv0452 0.81 +0.2 543,071 + +0.8 543,072 - +0.2 543,072 - -0.4 543,072 - -0.4 543,084 + +0.5 543,108 + +1.1 543,173 + -0.3 543,173 + +0.1 543,174 - +0.6 543,174 - -0.1 543,191 - -0.1 543,191 - +0.0 543,233 + +0.2 543,297 + -0.6 543,399 + Rv0453 0.14 +1.6 543,577 + Rv0453 0.26 +0.4 543,577 + Rv0453 0.26 -2.7 543,578 - Rv0453 0.26 -0.6 543,604 - Rv0453 0.28 -0.5 543,646 - Rv0453 0.30 -1.6 543,746 + Rv0453 0.37 +1.7 543,747 - Rv0453 0.37 +0.1
Or see this region's nucleotide sequence