Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0412c and Rv0413 are separated by 93 nucleotides Rv0413 and Rv0414c overlap by 17 nucleotides Rv0414c and Rv0415 are separated by 129 nucleotides
Rv0412c: Rv0412c - Possible conserved membrane protein, at 498,300 to 499,619
Rv0412c
Rv0413: Rv0413 - Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) (dGTP pyrophosphohydrolase), at 499,713 to 500,366
Rv0413
Rv0414c: Rv0414c - Thiamine-phosphate pyrophosphorylase ThiE (TMP pyrophosphorylase) (TMP-PPASE) (thiamine-phosphate synthase), at 500,350 to 501,018
Rv0414c
Rv0415: Rv0415 - Possible thiamine biosynthesis oxidoreductase ThiO, at 501,148 to 502,170
Rv0415
Position (kb) 499
500
501 Strain fitness (log2 ratio) -1
0
1
2 at 499.627 kb on - strand at 499.627 kb on - strand at 499.700 kb on + strand at 499.701 kb on - strand at 499.701 kb on - strand at 499.701 kb on - strand at 499.701 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.735 kb on - strand at 499.735 kb on - strand at 500.064 kb on + strand, within Rv0413 at 500.065 kb on - strand, within Rv0413 at 500.065 kb on - strand, within Rv0413 at 500.065 kb on - strand, within Rv0413 at 500.171 kb on - strand, within Rv0413 at 500.304 kb on - strand at 500.343 kb on - strand at 500.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 499,627 - -1.2 499,627 - -1.2 499,700 + +2.5 499,701 - -0.1 499,701 - -0.5 499,701 - -0.4 499,701 - -0.2 499,707 - -0.0 499,707 - +0.4 499,735 - -0.5 499,735 - -1.4 500,064 + Rv0413 0.54 -0.6 500,065 - Rv0413 0.54 +0.2 500,065 - Rv0413 0.54 -1.1 500,065 - Rv0413 0.54 -1.0 500,171 - Rv0413 0.70 -0.9 500,304 - -0.0 500,343 - +0.1 500,343 - -1.5
Or see this region's nucleotide sequence