Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0063 and Rv0064 are separated by 257 nucleotides Rv0064 and Rv0064A are separated by 29 nucleotides Rv0064A and Rv0065 overlap by 8 nucleotides Rv0065 and Rv0066c are separated by 51 nucleotides
Rv0063: Rv0063 - Possible oxidoreductase, at 66,923 to 68,362
Rv0063
Rv0064: Rv0064 - Probable conserved transmembrane protein, at 68,620 to 71,559
Rv0064
Rv0064A: Rv0064A - Possible antitoxin VapB1, at 71,589 to 71,828
Rv0064A
Rv0065: Rv0065 - Possible toxin VapC1, at 71,821 to 72,222
Rv0065
Rv0066c: Rv0066c - Probable isocitrate dehydrogenase [NADP] Icd2 (oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP), at 72,274 to 74,511
Rv0066c
Position (kb) 68
69
70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.898 kb on + strand, within Rv0063 at 67.916 kb on + strand, within Rv0063 at 67.916 kb on + strand, within Rv0063 at 67.955 kb on + strand, within Rv0063 at 68.150 kb on + strand, within Rv0063 at 68.151 kb on - strand, within Rv0063 at 68.151 kb on - strand, within Rv0063 at 68.186 kb on - strand, within Rv0063 at 68.237 kb on + strand at 68.246 kb on + strand at 68.247 kb on - strand at 68.247 kb on - strand at 68.247 kb on - strand at 68.276 kb on + strand at 68.311 kb on - strand at 68.311 kb on - strand at 68.321 kb on + strand at 68.322 kb on - strand at 68.322 kb on - strand at 68.377 kb on + strand at 68.378 kb on - strand at 68.381 kb on - strand at 68.407 kb on + strand at 68.595 kb on - strand at 68.733 kb on + strand at 68.733 kb on + strand at 68.737 kb on + strand at 68.738 kb on - strand at 68.738 kb on - strand at 69.191 kb on - strand, within Rv0064 at 69.191 kb on - strand, within Rv0064 at 69.281 kb on + strand, within Rv0064 at 69.317 kb on - strand, within Rv0064 at 69.589 kb on + strand, within Rv0064 at 69.657 kb on + strand, within Rv0064 at 69.658 kb on - strand, within Rv0064 at 69.675 kb on + strand, within Rv0064 at 69.928 kb on + strand, within Rv0064 at 70.030 kb on + strand, within Rv0064 at 70.031 kb on - strand, within Rv0064 at 70.100 kb on - strand, within Rv0064 at 70.102 kb on + strand, within Rv0064 at 70.535 kb on - strand, within Rv0064 at 70.728 kb on + strand, within Rv0064 at 70.933 kb on + strand, within Rv0064 at 70.988 kb on + strand, within Rv0064 at 71.143 kb on + strand, within Rv0064 at 71.143 kb on + strand, within Rv0064 at 71.144 kb on - strand, within Rv0064 at 71.144 kb on - strand, within Rv0064 at 71.300 kb on + strand at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.834 kb on + strand at 71.835 kb on - strand at 72.032 kb on - strand, within Rv0065 at 72.077 kb on - strand, within Rv0065 at 72.089 kb on + strand, within Rv0065
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 67,898 + Rv0063 0.68 +0.8 67,916 + Rv0063 0.69 -0.2 67,916 + Rv0063 0.69 +0.0 67,955 + Rv0063 0.72 +0.1 68,150 + Rv0063 0.85 +0.1 68,151 - Rv0063 0.85 -1.3 68,151 - Rv0063 0.85 +0.1 68,186 - Rv0063 0.88 -0.3 68,237 + +0.2 68,246 + +0.1 68,247 - -0.4 68,247 - +0.2 68,247 - +1.6 68,276 + -0.8 68,311 - +0.7 68,311 - -0.4 68,321 + -0.3 68,322 - +1.8 68,322 - +0.2 68,377 + -0.1 68,378 - -0.3 68,381 - -1.0 68,407 + -0.1 68,595 - -0.6 68,733 + +0.1 68,733 + +1.1 68,737 + -0.6 68,738 - -0.8 68,738 - +0.0 69,191 - Rv0064 0.19 +0.6 69,191 - Rv0064 0.19 -1.9 69,281 + Rv0064 0.22 -0.3 69,317 - Rv0064 0.24 +0.2 69,589 + Rv0064 0.33 +0.0 69,657 + Rv0064 0.35 +0.2 69,658 - Rv0064 0.35 +1.1 69,675 + Rv0064 0.36 +0.2 69,928 + Rv0064 0.44 +0.0 70,030 + Rv0064 0.48 +0.1 70,031 - Rv0064 0.48 +0.8 70,100 - Rv0064 0.50 -0.4 70,102 + Rv0064 0.50 +1.8 70,535 - Rv0064 0.65 -0.6 70,728 + Rv0064 0.72 +0.5 70,933 + Rv0064 0.79 +0.1 70,988 + Rv0064 0.81 +0.2 71,143 + Rv0064 0.86 +0.2 71,143 + Rv0064 0.86 -0.5 71,144 - Rv0064 0.86 -0.7 71,144 - Rv0064 0.86 -0.7 71,300 + -0.1 71,679 + Rv0064A 0.38 -0.6 71,679 + Rv0064A 0.38 +0.0 71,679 + Rv0064A 0.38 -1.7 71,679 + Rv0064A 0.38 -0.3 71,680 - Rv0064A 0.38 -0.4 71,680 - Rv0064A 0.38 -1.8 71,680 - Rv0064A 0.38 +0.0 71,834 + -0.3 71,835 - +0.1 72,032 - Rv0065 0.52 +0.1 72,077 - Rv0065 0.64 -0.3 72,089 + Rv0065 0.67 -0.2
Or see this region's nucleotide sequence