Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0053 and Rv0054 are separated by 103 nucleotides Rv0054 and Rv0055 are separated by 41 nucleotides Rv0055 and Rv0056 are separated by 32 nucleotides Rv0056 and Rv0057 are separated by 28 nucleotides Rv0057 and Rv0058 overlap by 22 nucleotides
Rv0053: Rv0053 - 30S ribosomal protein S6 RpsF, at 58,192 to 58,482
Rv0053
Rv0054: Rv0054 - Single-strand binding protein Ssb (helix-destabilizing protein), at 58,586 to 59,080
Rv0054
Rv0055: Rv0055 - 30S ribosomal protein S18-1 RpsR1, at 59,122 to 59,376
Rv0055
Rv0056: Rv0056 - 50S ribosomal protein L9 RplI, at 59,409 to 59,867
Rv0056
Rv0057: Rv0057 - Hypothetical protein, at 59,896 to 60,417
Rv0057
Rv0058: Rv0058 - Probable replicative DNA helicase DnaB, at 60,396 to 63,020
Rv0058
Position (kb) 59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 58.480 kb on + strand at 58.526 kb on + strand at 59.406 kb on - strand at 59.585 kb on - strand, within Rv0056 at 59.593 kb on + strand, within Rv0056 at 60.126 kb on + strand, within Rv0057 at 60.211 kb on + strand, within Rv0057 at 60.256 kb on + strand, within Rv0057 at 60.273 kb on + strand, within Rv0057 at 60.334 kb on + strand, within Rv0057 at 60.334 kb on + strand, within Rv0057 at 60.334 kb on + strand, within Rv0057
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 58,480 + -0.1 58,526 + -0.8 59,406 - +1.2 59,585 - Rv0056 0.38 -2.3 59,593 + Rv0056 0.40 -1.7 60,126 + Rv0057 0.44 -1.1 60,211 + Rv0057 0.60 -0.6 60,256 + Rv0057 0.69 +0.3 60,273 + Rv0057 0.72 +0.6 60,334 + Rv0057 0.84 -1.0 60,334 + Rv0057 0.84 -0.3 60,334 + Rv0057 0.84 -0.0
Or see this region's nucleotide sequence