Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2063

Experiment: MoLS4 with L-Methionine (1mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2062 and DVU2063 overlap by 4 nucleotidesDVU2063 and fabK are separated by 111 nucleotides DVU2062: DVU2062 - ATP-dependent DNA helicase, UvrD/REP family (TIGR), at 2,138,236 to 2,141,694 DVU2062 DVU2063: DVU2063 - conserved hypothetical protein (TIGR), at 2,141,691 to 2,144,645 DVU2063 DVU2064: fabK - oxidoreductase, 2-nitropropane dioxygenase family (TIGR), at 2,144,757 to 2,145,878 fabK Position (kb) 2141 2142 2143 2144 2145Strain fitness (log2 ratio) -2 -1 0 1at 2140.711 kb on - strand, within DVU2062at 2140.817 kb on + strand, within DVU2062at 2140.827 kb on + strand, within DVU2062at 2140.943 kb on - strand, within DVU2062at 2141.055 kb on + strand, within DVU2062at 2141.376 kb on + strandat 2141.408 kb on + strandat 2141.408 kb on + strandat 2141.431 kb on + strandat 2141.436 kb on + strandat 2141.439 kb on - strandat 2141.536 kb on + strandat 2141.566 kb on + strandat 2141.603 kb on - strandat 2141.625 kb on + strandat 2141.625 kb on - strandat 2141.888 kb on + strandat 2142.003 kb on - strand, within DVU2063at 2142.495 kb on - strand, within DVU2063at 2142.671 kb on + strand, within DVU2063at 2142.698 kb on + strand, within DVU2063at 2143.658 kb on + strand, within DVU2063at 2143.934 kb on + strand, within DVU2063at 2144.006 kb on - strand, within DVU2063at 2144.181 kb on - strand, within DVU2063at 2144.392 kb on + strandat 2144.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (1mM) as nutrient
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2,140,711 - DVU2062 0.72 -0.3
2,140,817 + DVU2062 0.75 -0.3
2,140,827 + DVU2062 0.75 -0.4
2,140,943 - DVU2062 0.78 -0.9
2,141,055 + DVU2062 0.81 +1.0
2,141,376 + +1.5
2,141,408 + -0.9
2,141,408 + -0.0
2,141,431 + +1.0
2,141,436 + -0.8
2,141,439 - -2.3
2,141,536 + -0.0
2,141,566 + -0.2
2,141,603 - +0.9
2,141,625 + +0.0
2,141,625 - +0.3
2,141,888 + -0.9
2,142,003 - DVU2063 0.11 -0.3
2,142,495 - DVU2063 0.27 +0.7
2,142,671 + DVU2063 0.33 -1.9
2,142,698 + DVU2063 0.34 -0.6
2,143,658 + DVU2063 0.67 -0.4
2,143,934 + DVU2063 0.76 -0.5
2,144,006 - DVU2063 0.78 +1.5
2,144,181 - DVU2063 0.84 +0.2
2,144,392 + -0.6
2,144,419 - -0.8

Or see this region's nucleotide sequence