Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1039

Experiment: MoLS4 with L-Methionine (1mM) as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1037 and hisA are separated by 102 nucleotideshisA and DVU1039 overlap by 4 nucleotidesDVU1039 and hisB overlap by 1 nucleotideshisB and tatC are separated by 16 nucleotides DVU1037: DVU1037 - mercuric reductase, putative (TIGR), at 1,139,907 to 1,141,349 DVU1037 DVU1038: hisA - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR), at 1,141,452 to 1,142,201 hisA DVU1039: DVU1039 - lipoprotein, putative (TIGR), at 1,142,198 to 1,142,839 DVU1039 DVU1040: hisB - imidazoleglycerol-phosphate dehydratase (TIGR), at 1,142,839 to 1,143,447 hisB DVU1041: tatC - Sec-independent protein translocase TatC (TIGR), at 1,143,464 to 1,144,237 tatC Position (kb) 1142 1143Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1141.217 kb on + strandat 1141.217 kb on + strandat 1141.218 kb on + strandat 1141.228 kb on + strandat 1141.236 kb on - strandat 1141.447 kb on - strandat 1141.478 kb on + strandat 1141.486 kb on - strandat 1141.503 kb on - strandat 1141.561 kb on + strand, within hisAat 1141.631 kb on - strand, within hisAat 1141.633 kb on + strand, within hisAat 1141.633 kb on + strand, within hisAat 1141.633 kb on + strand, within hisAat 1141.641 kb on - strand, within hisAat 1141.743 kb on + strand, within hisAat 1142.159 kb on + strandat 1142.220 kb on - strandat 1142.302 kb on - strand, within DVU1039at 1142.586 kb on + strand, within DVU1039at 1142.618 kb on + strand, within DVU1039at 1142.621 kb on - strand, within DVU1039at 1142.660 kb on - strand, within DVU1039at 1143.234 kb on - strand, within hisBat 1143.284 kb on + strand, within hisBat 1143.343 kb on + strand, within hisBat 1143.370 kb on + strand, within hisBat 1143.370 kb on + strand, within hisBat 1143.462 kb on + strandat 1143.483 kb on - strandat 1143.497 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (1mM) as nutrient
remove
1,141,217 + -0.9
1,141,217 + +0.3
1,141,218 + -1.2
1,141,228 + +0.0
1,141,236 - -0.0
1,141,447 - -1.2
1,141,478 + -6.1
1,141,486 - -0.4
1,141,503 - -2.3
1,141,561 + hisA DVU1038 0.15 -1.4
1,141,631 - hisA DVU1038 0.24 -2.0
1,141,633 + hisA DVU1038 0.24 -2.2
1,141,633 + hisA DVU1038 0.24 +0.5
1,141,633 + hisA DVU1038 0.24 -1.1
1,141,641 - hisA DVU1038 0.25 -1.1
1,141,743 + hisA DVU1038 0.39 -2.4
1,142,159 + -0.7
1,142,220 - -0.9
1,142,302 - DVU1039 0.16 -2.0
1,142,586 + DVU1039 0.60 -4.8
1,142,618 + DVU1039 0.65 -3.1
1,142,621 - DVU1039 0.66 -2.9
1,142,660 - DVU1039 0.72 -2.1
1,143,234 - hisB DVU1040 0.65 -1.4
1,143,284 + hisB DVU1040 0.73 -1.8
1,143,343 + hisB DVU1040 0.83 -2.8
1,143,370 + hisB DVU1040 0.87 -0.8
1,143,370 + hisB DVU1040 0.87 -1.6
1,143,462 + +0.3
1,143,483 - -0.3
1,143,497 + -1.7

Or see this region's nucleotide sequence