Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0920

Experiment: MoLS4 with L-Methionine (1mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpB and DVU0919 are separated by 4 nucleotidesDVU0919 and atpI overlap by 32 nucleotidesatpI and DVU0921 are separated by 187 nucleotidesDVU0921 and DVU0922 are separated by 42 nucleotides DVU0918: atpB - ATP synthase F0, A subunit (TIGR), at 1,010,942 to 1,011,643 atpB DVU0919: DVU0919 - hypothetical protein (TIGR), at 1,011,648 to 1,012,082 DVU0919 DVU0920: atpI - ATP synthase protein I (TIGR), at 1,012,051 to 1,012,329 atpI DVU0921: DVU0921 - 5-nitroimidazole antibiotic resistance protein, putative (TIGR), at 1,012,517 to 1,012,984 DVU0921 DVU0922: DVU0922 - cytochrome c family protein (TIGR), at 1,013,027 to 1,013,584 DVU0922 Position (kb) 1012 1013Strain fitness (log2 ratio) -2 -1 0 1at 1011.769 kb on - strand, within DVU0919at 1012.105 kb on - strand, within atpIat 1012.164 kb on - strand, within atpIat 1012.176 kb on + strand, within atpIat 1012.181 kb on + strand, within atpIat 1012.183 kb on - strand, within atpIat 1012.190 kb on - strand, within atpIat 1012.245 kb on - strand, within atpIat 1012.332 kb on - strandat 1012.434 kb on + strandat 1012.556 kb on + strandat 1012.654 kb on - strand, within DVU0921at 1012.656 kb on + strand, within DVU0921at 1012.656 kb on + strand, within DVU0921at 1012.671 kb on + strand, within DVU0921at 1012.679 kb on - strand, within DVU0921at 1012.689 kb on + strand, within DVU0921at 1012.697 kb on - strand, within DVU0921at 1012.747 kb on + strand, within DVU0921at 1012.755 kb on - strand, within DVU0921at 1012.774 kb on + strand, within DVU0921at 1012.851 kb on - strand, within DVU0921at 1012.860 kb on + strand, within DVU0921at 1012.860 kb on + strand, within DVU0921at 1012.882 kb on + strand, within DVU0921at 1012.882 kb on + strand, within DVU0921at 1013.030 kb on - strandat 1013.097 kb on + strand, within DVU0922at 1013.110 kb on - strand, within DVU0922at 1013.131 kb on - strand, within DVU0922at 1013.167 kb on - strand, within DVU0922at 1013.167 kb on - strand, within DVU0922at 1013.243 kb on - strand, within DVU0922at 1013.291 kb on - strand, within DVU0922

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (1mM) as nutrient
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1,011,769 - DVU0919 0.28 -0.6
1,012,105 - atpI DVU0920 0.19 -1.0
1,012,164 - atpI DVU0920 0.41 -1.8
1,012,176 + atpI DVU0920 0.45 +0.0
1,012,181 + atpI DVU0920 0.47 -1.4
1,012,183 - atpI DVU0920 0.47 -0.1
1,012,190 - atpI DVU0920 0.50 +0.5
1,012,245 - atpI DVU0920 0.70 -1.5
1,012,332 - -0.9
1,012,434 + -0.6
1,012,556 + -0.1
1,012,654 - DVU0921 0.29 -0.8
1,012,656 + DVU0921 0.30 -0.8
1,012,656 + DVU0921 0.30 -2.1
1,012,671 + DVU0921 0.33 -1.8
1,012,679 - DVU0921 0.35 -1.2
1,012,689 + DVU0921 0.37 -1.0
1,012,697 - DVU0921 0.38 -0.2
1,012,747 + DVU0921 0.49 -1.0
1,012,755 - DVU0921 0.51 +0.4
1,012,774 + DVU0921 0.55 -0.6
1,012,851 - DVU0921 0.71 -0.1
1,012,860 + DVU0921 0.73 +0.1
1,012,860 + DVU0921 0.73 -2.0
1,012,882 + DVU0921 0.78 -1.0
1,012,882 + DVU0921 0.78 -0.4
1,013,030 - -1.7
1,013,097 + DVU0922 0.13 -0.0
1,013,110 - DVU0922 0.15 -1.4
1,013,131 - DVU0922 0.19 -1.3
1,013,167 - DVU0922 0.25 -0.7
1,013,167 - DVU0922 0.25 -1.0
1,013,243 - DVU0922 0.39 -1.0
1,013,291 - DVU0922 0.47 -0.8

Or see this region's nucleotide sequence