Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2670

Experiment: MoLS4 with L-Methionine (1mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglmU and DVU2669 are separated by 31 nucleotidesDVU2669 and DVU2670 are separated by 19 nucleotidesDVU2670 and DVU2671 are separated by 391 nucleotides DVU2668: glmU - UDP-N-acetylglucosamine pyrophosphorylase, putative (TIGR), at 2,779,417 to 2,780,784 glmU DVU2669: DVU2669 - conserved domain protein (TIGR), at 2,780,816 to 2,781,052 DVU2669 DVU2670: DVU2670 - hypothetical protein (TIGR), at 2,781,072 to 2,781,335 DVU2670 DVU2671: DVU2671 - HDIG/HD/KH domain protein (TIGR), at 2,781,727 to 2,783,286 DVU2671 Position (kb) 2781 2782Strain fitness (log2 ratio) -2 -1 0 1at 2780.779 kb on + strandat 2780.801 kb on + strandat 2780.831 kb on - strandat 2780.874 kb on - strand, within DVU2669at 2781.046 kb on + strandat 2781.087 kb on - strandat 2781.100 kb on + strand, within DVU2670at 2781.120 kb on - strand, within DVU2670at 2781.233 kb on + strand, within DVU2670at 2781.491 kb on + strandat 2781.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (1mM) as nutrient
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2,780,779 + +0.1
2,780,801 + -0.4
2,780,831 - -0.3
2,780,874 - DVU2669 0.24 +0.1
2,781,046 + +0.3
2,781,087 - -0.3
2,781,100 + DVU2670 0.11 +0.1
2,781,120 - DVU2670 0.18 -1.3
2,781,233 + DVU2670 0.61 -1.6
2,781,491 + -2.0
2,781,614 - -0.5

Or see this region's nucleotide sequence