Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2687

Experiment: MoLS4 with L-Serine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2686 and DVU2687 are separated by 336 nucleotidesDVU2687 and DVU2688 are separated by 387 nucleotides DVU2686: DVU2686 - peptidase, S24 family (TIGR), at 2,799,591 to 2,800,373 DVU2686 DVU2687: DVU2687 - hypothetical protein (TIGR), at 2,800,710 to 2,801,090 DVU2687 DVU2688: DVU2688 - bacteriophage transposase A protein (TIGR), at 2,801,478 to 2,803,520 DVU2688 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -1 0 1at 2800.380 kb on - strandat 2800.584 kb on + strandat 2800.586 kb on + strandat 2800.592 kb on - strandat 2800.615 kb on - strandat 2800.645 kb on + strandat 2800.911 kb on - strand, within DVU2687at 2800.971 kb on + strand, within DVU2687at 2800.978 kb on + strand, within DVU2687at 2800.998 kb on + strand, within DVU2687at 2801.001 kb on - strand, within DVU2687at 2801.040 kb on - strand, within DVU2687at 2801.135 kb on - strandat 2801.169 kb on - strandat 2801.342 kb on + strandat 2801.342 kb on + strandat 2801.350 kb on - strandat 2801.350 kb on - strandat 2801.352 kb on + strandat 2801.359 kb on + strandat 2801.360 kb on - strandat 2801.367 kb on - strandat 2801.392 kb on - strandat 2801.394 kb on + strandat 2801.402 kb on - strandat 2801.402 kb on - strandat 2801.426 kb on - strandat 2801.464 kb on + strandat 2801.520 kb on - strandat 2801.562 kb on + strandat 2801.570 kb on - strandat 2801.650 kb on + strandat 2801.693 kb on - strand, within DVU2688at 2801.715 kb on + strand, within DVU2688at 2801.715 kb on + strand, within DVU2688at 2801.725 kb on - strand, within DVU2688at 2801.779 kb on + strand, within DVU2688at 2801.808 kb on + strand, within DVU2688at 2801.859 kb on + strand, within DVU2688at 2801.931 kb on - strand, within DVU2688at 2801.937 kb on + strand, within DVU2688at 2802.025 kb on - strand, within DVU2688at 2802.031 kb on - strand, within DVU2688

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine as (N)
remove
2,800,380 - +0.4
2,800,584 + -0.8
2,800,586 + -1.5
2,800,592 - -0.7
2,800,615 - -0.7
2,800,645 + -0.6
2,800,911 - DVU2687 0.53 -1.0
2,800,971 + DVU2687 0.69 -1.2
2,800,978 + DVU2687 0.70 -1.2
2,800,998 + DVU2687 0.76 -1.2
2,801,001 - DVU2687 0.76 +0.2
2,801,040 - DVU2687 0.87 -0.3
2,801,135 - +0.4
2,801,169 - -0.0
2,801,342 + +0.7
2,801,342 + -1.0
2,801,350 - -0.6
2,801,350 - -0.4
2,801,352 + +0.5
2,801,359 + -0.2
2,801,360 - -0.4
2,801,367 - +0.6
2,801,392 - +0.3
2,801,394 + +0.1
2,801,402 - +0.2
2,801,402 - -1.2
2,801,426 - -0.4
2,801,464 + -0.0
2,801,520 - -0.1
2,801,562 + +0.2
2,801,570 - -1.3
2,801,650 + -1.1
2,801,693 - DVU2688 0.11 -0.4
2,801,715 + DVU2688 0.12 -0.2
2,801,715 + DVU2688 0.12 -0.4
2,801,725 - DVU2688 0.12 -0.3
2,801,779 + DVU2688 0.15 +0.2
2,801,808 + DVU2688 0.16 +0.0
2,801,859 + DVU2688 0.19 +0.2
2,801,931 - DVU2688 0.22 +0.2
2,801,937 + DVU2688 0.22 +0.5
2,802,025 - DVU2688 0.27 -0.1
2,802,031 - DVU2688 0.27 -0.3

Or see this region's nucleotide sequence