Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1976

Experiment: MoLS4 with L-Serine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1975 and groEL are separated by 194 nucleotidesgroEL and groES are separated by 39 nucleotidesgroES and metT are separated by 284 nucleotides DVU1975: DVU1975 - methyl-accepting chemotaxis protein (TIGR), at 2,049,015 to 2,050,763 DVU1975 DVU1976: groEL - chaperonin, 60 kDa (TIGR), at 2,050,958 to 2,052,601 groEL DVU1977: groES - chaperonin, 10 kDa (TIGR), at 2,052,641 to 2,052,928 groES DVU1978: metT - methionine transporter from the Na+/H+ antiporter superfamily (Dmitry Rodionov), at 2,053,213 to 2,054,535 metT Position (kb) 2050 2051 2052 2053Strain fitness (log2 ratio) -2 -1 0 1 2at 2049.967 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.026 kb on + strand, within DVU1975at 2050.031 kb on - strand, within DVU1975at 2050.034 kb on - strand, within DVU1975at 2050.039 kb on - strand, within DVU1975at 2050.045 kb on - strand, within DVU1975at 2050.171 kb on - strand, within DVU1975at 2050.296 kb on + strand, within DVU1975at 2050.333 kb on - strand, within DVU1975at 2050.343 kb on - strand, within DVU1975at 2050.598 kb on - strandat 2050.853 kb on - strandat 2053.232 kb on + strandat 2053.232 kb on + strandat 2053.232 kb on + strandat 2053.232 kb on + strandat 2053.240 kb on - strandat 2053.250 kb on - strandat 2053.356 kb on - strand, within metTat 2053.380 kb on - strand, within metTat 2053.417 kb on - strand, within metTat 2053.486 kb on + strand, within metTat 2053.514 kb on - strand, within metTat 2053.553 kb on - strand, within metT

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine as (N)
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2,049,967 - DVU1975 0.54 +2.1
2,050,019 - DVU1975 0.57 -0.4
2,050,019 - DVU1975 0.57 +0.2
2,050,019 - DVU1975 0.57 +0.3
2,050,026 + DVU1975 0.58 -0.2
2,050,031 - DVU1975 0.58 +0.3
2,050,034 - DVU1975 0.58 -0.1
2,050,039 - DVU1975 0.59 +0.2
2,050,045 - DVU1975 0.59 -0.3
2,050,171 - DVU1975 0.66 -0.3
2,050,296 + DVU1975 0.73 +0.1
2,050,333 - DVU1975 0.75 -0.9
2,050,343 - DVU1975 0.76 +0.7
2,050,598 - -0.3
2,050,853 - -0.3
2,053,232 + -1.9
2,053,232 + -1.2
2,053,232 + -1.6
2,053,232 + +1.5
2,053,240 - -1.6
2,053,250 - -0.3
2,053,356 - metT DVU1978 0.11 -2.2
2,053,380 - metT DVU1978 0.13 -2.1
2,053,417 - metT DVU1978 0.15 -0.8
2,053,486 + metT DVU1978 0.21 +0.5
2,053,514 - metT DVU1978 0.23 -2.4
2,053,553 - metT DVU1978 0.26 -0.1

Or see this region's nucleotide sequence