Experiment: MoLS4 with L-Serine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0029 and DORF25031 are separated by 73 nucleotides DORF25031 and DVU0030 are separated by 305 nucleotides DVU0030 and DORF25047 are separated by 277 nucleotides DORF25047 and DVU0031 overlap by 1 nucleotides
DVU0029: DVU0029 - hydantoinase/oxoprolinase family protein (TIGR), at 33,986 to 35,698
DVU0029
DORF25031: DORF25031 - SEED: FIG00606465: hypothetical protein, at 35,772 to 36,176
DORF25031
DVU0030: DVU0030 - transcriptional regulator, GntR family (TIGR), at 36,482 to 37,984
DVU0030
DORF25047: DORF25047 - no description, at 38,262 to 38,435
DORF25047
DVU0031: DVU0031 - AzlC family protein (TIGR), at 38,435 to 39,172
DVU0031
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.522 kb on + strand, within DVU0029 at 35.550 kb on + strand at 35.599 kb on + strand at 35.607 kb on - strand at 35.642 kb on + strand at 35.665 kb on + strand at 35.670 kb on + strand at 35.762 kb on - strand at 35.764 kb on + strand at 35.864 kb on - strand, within DORF25031 at 35.913 kb on + strand, within DORF25031 at 35.979 kb on + strand, within DORF25031 at 35.979 kb on + strand, within DORF25031 at 36.014 kb on - strand, within DORF25031 at 36.014 kb on - strand, within DORF25031 at 36.048 kb on - strand, within DORF25031 at 36.155 kb on + strand at 36.220 kb on + strand at 36.220 kb on + strand at 36.228 kb on - strand at 36.232 kb on + strand at 36.265 kb on + strand at 36.282 kb on - strand at 36.311 kb on - strand at 36.323 kb on + strand at 36.331 kb on - strand at 36.333 kb on - strand at 36.358 kb on - strand at 36.371 kb on + strand at 36.379 kb on - strand at 36.529 kb on - strand at 36.551 kb on - strand at 36.622 kb on - strand at 36.641 kb on + strand, within DVU0030 at 36.649 kb on - strand, within DVU0030 at 36.655 kb on + strand, within DVU0030 at 36.706 kb on + strand, within DVU0030 at 36.714 kb on - strand, within DVU0030 at 36.758 kb on - strand, within DVU0030 at 36.811 kb on - strand, within DVU0030 at 36.824 kb on - strand, within DVU0030 at 36.871 kb on + strand, within DVU0030 at 36.910 kb on + strand, within DVU0030 at 36.937 kb on - strand, within DVU0030 at 36.953 kb on - strand, within DVU0030 at 37.016 kb on - strand, within DVU0030 at 37.016 kb on - strand, within DVU0030 at 37.020 kb on + strand, within DVU0030 at 37.041 kb on - strand, within DVU0030 at 37.057 kb on - strand, within DVU0030 at 37.063 kb on + strand, within DVU0030 at 37.065 kb on - strand, within DVU0030 at 37.072 kb on - strand, within DVU0030 at 37.080 kb on + strand, within DVU0030 at 37.120 kb on + strand, within DVU0030 at 37.128 kb on - strand, within DVU0030 at 37.182 kb on - strand, within DVU0030 at 37.210 kb on + strand, within DVU0030 at 37.246 kb on - strand, within DVU0030 at 37.246 kb on - strand, within DVU0030 at 37.340 kb on + strand, within DVU0030 at 37.355 kb on + strand, within DVU0030 at 37.394 kb on - strand, within DVU0030 at 37.403 kb on + strand, within DVU0030 at 37.408 kb on - strand, within DVU0030 at 37.433 kb on + strand, within DVU0030 at 37.453 kb on + strand, within DVU0030 at 37.503 kb on + strand, within DVU0030 at 37.506 kb on - strand, within DVU0030 at 37.508 kb on + strand, within DVU0030 at 37.508 kb on + strand, within DVU0030 at 37.508 kb on + strand, within DVU0030 at 37.508 kb on + strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.516 kb on - strand, within DVU0030 at 37.518 kb on + strand, within DVU0030 at 37.526 kb on - strand, within DVU0030 at 37.528 kb on - strand, within DVU0030 at 37.640 kb on - strand, within DVU0030 at 37.641 kb on - strand, within DVU0030 at 37.641 kb on - strand, within DVU0030 at 37.662 kb on + strand, within DVU0030 at 37.662 kb on + strand, within DVU0030 at 37.662 kb on + strand, within DVU0030 at 37.670 kb on - strand, within DVU0030 at 37.670 kb on - strand, within DVU0030 at 37.670 kb on - strand, within DVU0030 at 37.767 kb on + strand, within DVU0030 at 37.809 kb on + strand, within DVU0030 at 37.809 kb on + strand, within DVU0030 at 37.817 kb on - strand, within DVU0030 at 38.066 kb on - strand at 38.084 kb on - strand at 38.090 kb on + strand at 38.151 kb on + strand at 38.153 kb on + strand at 38.161 kb on - strand at 38.203 kb on + strand at 38.211 kb on - strand at 38.284 kb on - strand, within DORF25047 at 38.286 kb on + strand, within DORF25047 at 38.291 kb on + strand, within DORF25047 at 38.291 kb on + strand, within DORF25047 at 38.291 kb on - strand, within DORF25047 at 38.300 kb on - strand, within DORF25047 at 38.309 kb on + strand, within DORF25047 at 38.324 kb on + strand, within DORF25047 at 38.341 kb on + strand, within DORF25047 at 38.383 kb on + strand, within DORF25047 at 38.429 kb on + strand at 38.453 kb on + strand at 38.461 kb on - strand at 38.477 kb on + strand at 38.485 kb on - strand at 38.492 kb on + strand at 38.506 kb on - strand at 38.513 kb on + strand, within DVU0031 at 38.513 kb on - strand, within DVU0031 at 38.513 kb on - strand, within DVU0031 at 38.580 kb on + strand, within DVU0031 at 38.590 kb on + strand, within DVU0031 at 38.598 kb on + strand, within DVU0031 at 38.624 kb on + strand, within DVU0031 at 38.629 kb on + strand, within DVU0031 at 38.629 kb on + strand, within DVU0031 at 38.629 kb on + strand, within DVU0031 at 38.669 kb on - strand, within DVU0031 at 38.729 kb on + strand, within DVU0031 at 38.729 kb on + strand, within DVU0031 at 38.753 kb on + strand, within DVU0031 at 38.768 kb on + strand, within DVU0031 at 38.776 kb on - strand, within DVU0031 at 38.886 kb on - strand, within DVU0031 at 38.893 kb on + strand, within DVU0031 at 38.908 kb on - strand, within DVU0031 at 38.915 kb on + strand, within DVU0031 at 38.923 kb on - strand, within DVU0031 at 38.941 kb on - strand, within DVU0031 at 38.973 kb on + strand, within DVU0031
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Serine as (N) remove 35,522 + DVU0029 0.90 -0.5 35,550 + -0.3 35,599 + -0.1 35,607 - -0.2 35,642 + -0.4 35,665 + -0.3 35,670 + -0.8 35,762 - +0.1 35,764 + -0.1 35,864 - DORF25031 0.23 -0.1 35,913 + DORF25031 0.35 +0.8 35,979 + DORF25031 0.51 +0.7 35,979 + DORF25031 0.51 +0.3 36,014 - DORF25031 0.60 -0.2 36,014 - DORF25031 0.60 +0.1 36,048 - DORF25031 0.68 +0.2 36,155 + -0.2 36,220 + +0.2 36,220 + +0.1 36,228 - +0.4 36,232 + +0.4 36,265 + -0.4 36,282 - +0.5 36,311 - +0.1 36,323 + +0.1 36,331 - +0.2 36,333 - -1.1 36,358 - +0.0 36,371 + +0.2 36,379 - -0.3 36,529 - -0.3 36,551 - -0.3 36,622 - -0.9 36,641 + DVU0030 0.11 -0.5 36,649 - DVU0030 0.11 -0.3 36,655 + DVU0030 0.12 -0.7 36,706 + DVU0030 0.15 -1.4 36,714 - DVU0030 0.15 -1.1 36,758 - DVU0030 0.18 -0.8 36,811 - DVU0030 0.22 -1.3 36,824 - DVU0030 0.23 -0.5 36,871 + DVU0030 0.26 -0.3 36,910 + DVU0030 0.28 -1.7 36,937 - DVU0030 0.30 -1.2 36,953 - DVU0030 0.31 -0.9 37,016 - DVU0030 0.36 +0.2 37,016 - DVU0030 0.36 -0.1 37,020 + DVU0030 0.36 -1.8 37,041 - DVU0030 0.37 -0.1 37,057 - DVU0030 0.38 -0.5 37,063 + DVU0030 0.39 -0.7 37,065 - DVU0030 0.39 -1.0 37,072 - DVU0030 0.39 -0.7 37,080 + DVU0030 0.40 +1.9 37,120 + DVU0030 0.42 -0.6 37,128 - DVU0030 0.43 -0.1 37,182 - DVU0030 0.47 -1.6 37,210 + DVU0030 0.48 -1.0 37,246 - DVU0030 0.51 -0.7 37,246 - DVU0030 0.51 -1.2 37,340 + DVU0030 0.57 +0.4 37,355 + DVU0030 0.58 -0.6 37,394 - DVU0030 0.61 -1.0 37,403 + DVU0030 0.61 -0.8 37,408 - DVU0030 0.62 -1.0 37,433 + DVU0030 0.63 -0.9 37,453 + DVU0030 0.65 -1.6 37,503 + DVU0030 0.68 -0.4 37,506 - DVU0030 0.68 -0.8 37,508 + DVU0030 0.68 -1.0 37,508 + DVU0030 0.68 -0.8 37,508 + DVU0030 0.68 -0.2 37,508 + DVU0030 0.68 -0.1 37,516 - DVU0030 0.69 -0.7 37,516 - DVU0030 0.69 -1.9 37,516 - DVU0030 0.69 -0.8 37,516 - DVU0030 0.69 -0.9 37,516 - DVU0030 0.69 -1.4 37,516 - DVU0030 0.69 -1.8 37,518 + DVU0030 0.69 -1.2 37,526 - DVU0030 0.69 -0.6 37,528 - DVU0030 0.70 -0.3 37,640 - DVU0030 0.77 -0.3 37,641 - DVU0030 0.77 -1.2 37,641 - DVU0030 0.77 -0.7 37,662 + DVU0030 0.79 -0.8 37,662 + DVU0030 0.79 -1.1 37,662 + DVU0030 0.79 -0.4 37,670 - DVU0030 0.79 -0.8 37,670 - DVU0030 0.79 -0.6 37,670 - DVU0030 0.79 -0.6 37,767 + DVU0030 0.85 -0.8 37,809 + DVU0030 0.88 +0.0 37,809 + DVU0030 0.88 -0.3 37,817 - DVU0030 0.89 -1.8 38,066 - +0.0 38,084 - -0.7 38,090 + -0.4 38,151 + -0.1 38,153 + -0.2 38,161 - +0.3 38,203 + -1.4 38,211 - -0.4 38,284 - DORF25047 0.13 -0.4 38,286 + DORF25047 0.14 +1.0 38,291 + DORF25047 0.17 -0.0 38,291 + DORF25047 0.17 +0.0 38,291 - DORF25047 0.17 -0.2 38,300 - DORF25047 0.22 -0.3 38,309 + DORF25047 0.27 +0.3 38,324 + DORF25047 0.36 -0.5 38,341 + DORF25047 0.45 -1.0 38,383 + DORF25047 0.70 -0.2 38,429 + -0.0 38,453 + -0.6 38,461 - -0.6 38,477 + -0.8 38,485 - -0.4 38,492 + -2.1 38,506 - +0.2 38,513 + DVU0031 0.11 -0.6 38,513 - DVU0031 0.11 +0.3 38,513 - DVU0031 0.11 -0.8 38,580 + DVU0031 0.20 -0.6 38,590 + DVU0031 0.21 -0.1 38,598 + DVU0031 0.22 +0.2 38,624 + DVU0031 0.26 +0.1 38,629 + DVU0031 0.26 -0.8 38,629 + DVU0031 0.26 -0.5 38,629 + DVU0031 0.26 -0.2 38,669 - DVU0031 0.32 -0.3 38,729 + DVU0031 0.40 +0.4 38,729 + DVU0031 0.40 -0.9 38,753 + DVU0031 0.43 -0.4 38,768 + DVU0031 0.45 -0.7 38,776 - DVU0031 0.46 +0.1 38,886 - DVU0031 0.61 -0.4 38,893 + DVU0031 0.62 -0.9 38,908 - DVU0031 0.64 -0.0 38,915 + DVU0031 0.65 -0.2 38,923 - DVU0031 0.66 -0.2 38,941 - DVU0031 0.69 -0.6 38,973 + DVU0031 0.73 -0.6
Or see this region's nucleotide sequence