Experiment: 7H9 with Clofazimine 0.45 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3663c and Rv3664c overlap by 4 nucleotides Rv3664c and Rv3665c are separated by 55 nucleotides Rv3665c and Rv3666c are separated by 1 nucleotides
Rv3663c: Rv3663c - Probable dipeptide-transport ATP-binding protein ABC transporter DppD, at 4,102,032 to 4,103,678
Rv3663c
Rv3664c: Rv3664c - Probable dipeptide-transport integral membrane protein ABC transporter DppC, at 4,103,675 to 4,104,475
Rv3664c
Rv3665c: Rv3665c - Probable dipeptide-transport integral membrane protein ABC transporter DppB, at 4,104,531 to 4,105,457
Rv3665c
Rv3666c: Rv3666c - Probable periplasmic dipeptide-binding lipoprotein DppA, at 4,105,459 to 4,107,084
Rv3666c
Position (kb) 4104
4105
4106 Strain fitness (log2 ratio) -1
0
1
2 at 4104.213 kb on + strand, within Rv3664c at 4104.303 kb on + strand, within Rv3664c at 4104.397 kb on - strand at 4104.482 kb on - strand at 4104.482 kb on - strand at 4105.447 kb on + strand at 4105.998 kb on - strand, within Rv3666c at 4106.337 kb on - strand, within Rv3666c at 4106.362 kb on - strand, within Rv3666c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.45 ug/mL remove 4,104,213 + Rv3664c 0.67 +0.1 4,104,303 + Rv3664c 0.78 -0.4 4,104,397 - -0.8 4,104,482 - -0.3 4,104,482 - -0.5 4,105,447 + -0.6 4,105,998 - Rv3666c 0.33 +0.5 4,106,337 - Rv3666c 0.54 -0.5 4,106,362 - Rv3666c 0.56 +1.8
Or see this region's nucleotide sequence