Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3578

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
4,019,258	+				-0.4
4,019,863	-		Rv3577	0.69	-0.7
4,019,901	+		Rv3577	0.74	-1.4
4,019,902	-		Rv3577	0.74	-0.8
4,019,902	-		Rv3577	0.74	-1.9
4,019,902	-		Rv3577	0.74	-0.8
4,020,032	-		Rv3577	0.89	-0.3
4,020,032	-		Rv3577	0.89	+0.0
4,020,136	+				-1.0
4,020,556	+		Rv3578	0.33	-0.7
4,020,557	-		Rv3578	0.33	-0.9
4,020,628	+		Rv3578	0.39	-0.1
4,020,628	+		Rv3578	0.39	-0.8
4,020,706	+		Rv3578	0.45	-1.2
4,020,706	+		Rv3578	0.45	-0.5
4,020,707	-		Rv3578	0.45	-0.2
4,020,740	+		Rv3578	0.48	-1.8
4,021,220	-		Rv3578	0.87	+0.8