Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2788

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
3,096,070	+		Rv2787	0.54	+0.2
3,096,070	+		Rv2787	0.54	+0.5
3,096,071	-		Rv2787	0.54	-0.1
3,096,071	-		Rv2787	0.54	-0.5
3,096,106	+		Rv2787	0.56	-0.2
3,096,359	+		Rv2787	0.71	+0.5
3,096,359	+		Rv2787	0.71	+0.9
3,096,695	+		Rv2787	0.90	-0.0
3,096,813	+				+0.2
3,096,942	-				-0.9
3,096,945	+				-0.0
3,096,946	-				+1.5
3,096,988	+				+0.1
3,097,459	+		Rv2788	0.73	-0.7
3,097,460	-		Rv2788	0.73	-0.8
3,097,665	+				+0.1
3,097,779	+				-1.1
3,097,971	-		Rv2789c	0.21	+0.2
3,098,076	+		Rv2789c	0.30	-0.6
3,098,397	+		Rv2789c	0.56	+0.7
3,098,439	+		Rv2789c	0.59	-0.2
3,098,440	-		Rv2789c	0.60	+0.5