Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1207

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
1,350,236	-		Rv1206	0.50	-0.2
1,350,461	-		Rv1206	0.63	-0.4
1,350,800	-		Rv1206	0.82	+0.4
1,350,902	-		Rv1206	0.88	-0.3
1,351,036	+				+0.7
1,351,036	+				-0.0
1,351,040	+				+0.5
1,351,041	-				-1.1
1,351,041	-				+0.4
1,351,063	+				-0.1
1,351,063	+				+2.9
1,351,063	+				-1.4
1,351,064	-				+0.4
1,351,072	+				+0.5
1,351,072	+				-0.2
1,351,073	-				+0.8
1,351,075	+				-0.0
1,351,084	+				+0.1
1,351,085	-				+1.0
1,351,183	-				-2.1
1,351,734	+		Rv1207	0.57	-1.6
1,351,734	+		Rv1207	0.57	-0.9
1,351,734	+		Rv1207	0.57	-1.5
1,351,735	-		Rv1207	0.57	-0.8
1,351,735	-		Rv1207	0.57	-0.3
1,351,740	-		Rv1207	0.57	+0.3
1,351,740	-		Rv1207	0.57	-1.3
1,351,773	-		Rv1207	0.61	-1.3
1,351,910	+		Rv1207	0.75	-1.4
1,351,910	+		Rv1207	0.75	+0.3
1,351,911	-		Rv1207	0.75	-0.7
1,353,139	+				+1.3