Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1062

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
1,184,139	+		Rv1061	0.14	-1.5
1,184,166	+		Rv1061	0.17	-0.1
1,184,291	-		Rv1061	0.32	-0.0
1,184,291	-		Rv1061	0.32	+1.0
1,184,424	+		Rv1061	0.47	-0.6
1,184,522	+		Rv1061	0.59	+0.7
1,184,522	+		Rv1061	0.59	-0.4
1,184,559	+		Rv1061	0.63	+1.0
1,184,560	-		Rv1061	0.63	-0.2
1,184,560	-		Rv1061	0.63	-2.1
1,184,594	+		Rv1061	0.67	+1.4
1,184,595	-		Rv1061	0.67	+0.8
1,184,597	-		Rv1061	0.67	+0.6
1,184,597	-		Rv1061	0.67	-0.4
1,184,597	-		Rv1061	0.67	-0.7
1,185,082	-		Rv1062	0.23	+0.5
1,185,448	-		Rv1062	0.66	-1.7
1,185,880	-		Rv1063c	0.13	-0.7
1,185,905	-		Rv1063c	0.15	-0.5
1,185,917	+		Rv1063c	0.16	-0.4
1,185,917	+		Rv1063c	0.16	-0.1
1,185,918	-		Rv1063c	0.16	-1.3
1,186,122	-		Rv1063c	0.35	-0.7
1,186,375	-		Rv1063c	0.59	+0.5
1,186,444	-		Rv1063c	0.65	-0.3
1,186,559	+		Rv1063c	0.76	-1.4
1,186,559	+		Rv1063c	0.76	+0.8
1,186,560	-		Rv1063c	0.76	+1.8
1,186,696	+		Rv1063c	0.88	-0.4