Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3573c

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
4,013,386	-				+1.0
4,013,483	-				-1.1
4,013,560	+				+1.7
4,013,788	-		Rv3572	0.52	-0.7
4,013,862	+		Rv3572	0.66	+0.6
4,013,862	+		Rv3572	0.66	-0.8
4,013,863	-		Rv3572	0.66	-0.8
4,013,863	-		Rv3572	0.66	-0.6
4,013,889	+		Rv3572	0.71	-0.9
4,013,966	+		Rv3572	0.86	-1.0
4,013,966	+		Rv3572	0.86	-1.4
4,013,966	+		Rv3572	0.86	-0.9
4,013,966	+		Rv3572	0.86	-0.9
4,014,043	+				-0.3
4,014,642	+		Rv3573c	0.26	+0.6
4,014,643	-		Rv3573c	0.26	-1.0
4,014,643	-		Rv3573c	0.26	-0.3
4,014,647	-		Rv3573c	0.27	+0.2
4,014,647	-		Rv3573c	0.27	+0.1
4,015,249	-		Rv3573c	0.55	-0.2
4,015,301	-		Rv3573c	0.57	-0.3
4,015,695	-		Rv3573c	0.76	-0.2
4,016,101	-				-0.1
4,016,242	+				-1.5
4,016,243	-				-0.4
4,016,243	-				-0.4
4,016,282	-				-0.2
4,016,315	+				-0.5
4,016,316	-				+0.0
4,016,316	-				-0.2
4,016,316	-				+1.5
4,016,362	+				-0.8
4,016,362	+				+1.7
4,016,363	-				+0.2
4,016,418	+				-1.3
4,016,447	+				-0.9
4,016,492	-				+0.8
4,016,644	-		Rv3574	0.27	+0.1
4,016,835	+		Rv3574	0.58	+2.7
4,017,082	-				-0.1
4,017,179	+				+0.3