Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2090

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
2,347,206	+		Rv2089c	0.89	-0.2
2,347,206	+		Rv2089c	0.89	+0.5
2,347,293	+				-0.3
2,347,920	+		Rv2090	0.46	+0.0
2,348,087	+		Rv2090	0.60	-1.0
2,348,266	-		Rv2090	0.76	+0.2
2,348,286	+		Rv2090	0.77	-1.5
2,348,287	-		Rv2090	0.77	-1.0
2,348,340	+		Rv2090	0.82	-0.7
2,348,340	+		Rv2090	0.82	+0.0
2,348,340	+		Rv2090	0.82	-0.1
2,348,341	-		Rv2090	0.82	-0.6
2,348,345	-		Rv2090	0.82	-0.2
2,348,345	-		Rv2090	0.82	-1.9
2,348,345	-		Rv2090	0.82	-0.2
2,348,345	-		Rv2090	0.82	-0.4
2,348,370	-		Rv2090	0.84	-0.5
2,348,560	-				-1.2
2,348,560	-				+1.8
2,348,580	+				-1.1
2,348,580	+				-1.5
2,348,581	-				+0.0
2,348,773	+		Rv2091c	0.29	+0.1
2,348,829	-		Rv2091c	0.37	+1.7
2,348,919	+		Rv2091c	0.49	-0.5
2,348,976	+		Rv2091c	0.57	-0.4
2,348,976	+		Rv2091c	0.57	+0.4
2,348,994	+		Rv2091c	0.59	-0.2
2,349,012	+		Rv2091c	0.62	-0.2
2,349,021	+		Rv2091c	0.63	-0.3
2,349,021	+		Rv2091c	0.63	+0.5
2,349,022	-		Rv2091c	0.63	-0.5
2,349,135	+		Rv2091c	0.79	-0.3
2,349,320	-				-0.1
2,349,378	+				-0.2