Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1803c

Experiment: 7H9 with Clofazimine 0.45 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.45 ug/mL
2,044,023	+		Rv1802	0.46	-0.3
2,044,024	-		Rv1802	0.46	+0.4
2,044,024	-		Rv1802	0.46	-0.6
2,044,024	-		Rv1802	0.46	+0.4
2,044,071	+		Rv1802	0.49	-0.1
2,044,072	-		Rv1802	0.49	-0.3
2,044,087	-		Rv1802	0.51	-0.6
2,044,087	-		Rv1802	0.51	-0.4
2,044,087	-		Rv1802	0.51	-0.3
2,044,088	+		Rv1802	0.51	-0.2
2,044,089	-		Rv1802	0.51	-0.2
2,044,150	+		Rv1802	0.55	-0.1
2,044,151	-		Rv1802	0.55	+0.2
2,044,153	+		Rv1802	0.55	-0.9
2,044,154	-		Rv1802	0.55	-0.1
2,044,154	-		Rv1802	0.55	+0.3
2,044,240	+		Rv1802	0.61	+0.1
2,044,442	+		Rv1802	0.76	+0.5
2,044,442	+		Rv1802	0.76	-0.1
2,044,443	-		Rv1802	0.76	-0.4
2,044,679	-				-0.6
2,045,253	+		Rv1803c	0.17	-2.0
2,045,254	-		Rv1803c	0.17	-1.3
2,045,254	-		Rv1803c	0.17	-0.0
2,045,254	-		Rv1803c	0.17	+0.0
2,045,310	-		Rv1803c	0.20	+0.2
2,045,319	+		Rv1803c	0.21	+1.2
2,045,320	-		Rv1803c	0.21	+0.9
2,045,459	-		Rv1803c	0.28	-0.5
2,045,460	+		Rv1803c	0.28	+1.0
2,045,460	+		Rv1803c	0.28	+0.0
2,045,460	+		Rv1803c	0.28	+0.0
2,045,461	-		Rv1803c	0.28	-0.2
2,045,461	-		Rv1803c	0.28	+1.5
2,045,585	+		Rv1803c	0.34	-0.2
2,045,585	+		Rv1803c	0.34	-0.4
2,045,586	-		Rv1803c	0.35	+0.3
2,045,601	-		Rv1803c	0.35	-0.0
2,045,611	-		Rv1803c	0.36	-0.6
2,045,777	+		Rv1803c	0.44	-0.3
2,045,777	+		Rv1803c	0.44	+0.2
2,045,778	-		Rv1803c	0.45	-0.1
2,045,778	-		Rv1803c	0.45	+2.2
2,045,778	-		Rv1803c	0.45	+0.7
2,045,780	+		Rv1803c	0.45	+0.5
2,046,010	-		Rv1803c	0.57	+0.3
2,046,047	+		Rv1803c	0.59	-0.4
2,046,048	-		Rv1803c	0.59	-0.4
2,046,226	+		Rv1803c	0.68	+0.0
2,046,226	+		Rv1803c	0.68	-0.0
2,046,226	+		Rv1803c	0.68	+0.4
2,046,227	-		Rv1803c	0.68	+0.0
2,046,227	-		Rv1803c	0.68	+3.3
2,046,340	-		Rv1803c	0.74	+0.0
2,046,340	-		Rv1803c	0.74	-0.4
2,046,410	-		Rv1803c	0.77	-0.3
2,046,410	-		Rv1803c	0.77	+0.7
2,046,410	-		Rv1803c	0.77	-0.0
2,046,411	+		Rv1803c	0.78	+0.5
2,046,412	-		Rv1803c	0.78	+1.1
2,046,577	+		Rv1803c	0.86	+0.0
2,046,652	+				+0.5
2,046,653	-				+0.2
2,046,653	-				+0.4
2,046,776	+				+0.4
2,046,777	-				+0.3
2,046,777	-				-0.2
2,046,783	+				-0.1
2,046,875	+				+0.7
2,046,876	-				-0.4
2,046,914	-				-0.4
2,047,203	+		Rv1804c	0.55	-0.2
2,047,204	-		Rv1804c	0.55	-0.3
2,047,229	+		Rv1804c	0.63	+0.1
2,047,229	+		Rv1804c	0.63	-0.2
2,047,350	-				+0.3
2,047,414	-				+0.2
2,047,523	-				-0.3
2,047,607	+				+0.1
2,047,608	-				-0.0