Experiment: 7H9 with Clofazimine 0.45 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0228 and Rv0229c are separated by 27 nucleotides Rv0229c and Rv0230c overlap by 4 nucleotides
Rv0228: Rv0228 - Probable integral membrane acyltransferase, at 273,055 to 274,278
Rv0228
Rv0229c: Rv0229c - Possible conserved membrane protein with PIN domain, at 274,306 to 274,986
Rv0229c
Rv0230c: Rv0230c - Probable phosphotriesterase Php (parathion hydrolase) (PTE) (aryldialkylphosphatase) (paraoxonase) (a-esterase) (aryltriphosphatase) (paraoxon hydrolase), at 274,983 to 275,963
Rv0230c
Position (kb) 274
275 Strain fitness (log2 ratio) -2
-1
0
1 at 274.307 kb on + strand at 274.390 kb on + strand, within Rv0229c at 274.391 kb on - strand, within Rv0229c at 274.461 kb on + strand, within Rv0229c at 274.474 kb on + strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.706 kb on + strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.919 kb on - strand at 274.939 kb on + strand at 275.108 kb on - strand, within Rv0230c at 275.162 kb on - strand, within Rv0230c at 275.182 kb on - strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.288 kb on - strand, within Rv0230c at 275.317 kb on + strand, within Rv0230c at 275.318 kb on - strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.639 kb on - strand, within Rv0230c at 275.647 kb on + strand, within Rv0230c at 275.665 kb on + strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.737 kb on + strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.948 kb on + strand at 275.948 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.953 kb on - strand at 275.975 kb on + strand at 275.975 kb on + strand at 275.976 kb on - strand at 275.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.45 ug/mL remove 274,307 + -1.2 274,390 + Rv0229c 0.12 -0.1 274,391 - Rv0229c 0.12 -0.5 274,461 + Rv0229c 0.23 -0.6 274,474 + Rv0229c 0.25 -0.4 274,607 - Rv0229c 0.44 -1.4 274,607 - Rv0229c 0.44 +1.7 274,706 + Rv0229c 0.59 -0.6 274,707 - Rv0229c 0.59 -2.3 274,707 - Rv0229c 0.59 +1.7 274,854 - Rv0229c 0.80 +0.3 274,854 - Rv0229c 0.80 -0.9 274,919 - +0.0 274,939 + -0.6 275,108 - Rv0230c 0.13 +0.1 275,162 - Rv0230c 0.18 +0.5 275,182 - Rv0230c 0.20 +0.2 275,287 + Rv0230c 0.31 -0.2 275,287 + Rv0230c 0.31 +0.1 275,288 - Rv0230c 0.31 +0.6 275,317 + Rv0230c 0.34 -0.5 275,318 - Rv0230c 0.34 -0.2 275,638 + Rv0230c 0.67 +0.5 275,638 + Rv0230c 0.67 -0.8 275,639 - Rv0230c 0.67 -0.1 275,647 + Rv0230c 0.68 -0.8 275,665 + Rv0230c 0.70 -0.2 275,666 - Rv0230c 0.70 +0.1 275,666 - Rv0230c 0.70 +0.4 275,671 + Rv0230c 0.70 -0.1 275,671 + Rv0230c 0.70 -0.1 275,671 + Rv0230c 0.70 +0.1 275,737 + Rv0230c 0.77 -0.5 275,738 - Rv0230c 0.77 +0.3 275,738 - Rv0230c 0.77 +0.6 275,948 + -1.5 275,948 + -0.6 275,952 + +0.7 275,952 + +0.4 275,952 + -0.2 275,952 + +0.2 275,953 - -0.5 275,975 + -0.6 275,975 + -0.0 275,976 - +0.1 275,976 - +0.5
Or see this region's nucleotide sequence