Experiment: 7H9 with Clofazimine 0.45 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0215c and Rv0216 are separated by 56 nucleotides Rv0216 and Rv0217c overlap by 4 nucleotides Rv0217c and Rv0218 are separated by 92 nucleotides
Rv0215c: Rv0215c - Probable acyl-CoA dehydrogenase FadE3, at 257,783 to 258,856
Rv0215c
Rv0216: Rv0216 - Double hotdog hydratase, at 258,913 to 259,926
Rv0216
Rv0217c: Rv0217c - Possible esterase LipW, at 259,923 to 260,831
Rv0217c
Rv0218: Rv0218 - Probable conserved transmembrane protein, at 260,924 to 262,252
Rv0218
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1
2 at 257.926 kb on - strand, within Rv0215c at 257.991 kb on + strand, within Rv0215c at 257.992 kb on - strand, within Rv0215c at 258.531 kb on + strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.651 kb on + strand, within Rv0215c at 258.681 kb on + strand, within Rv0215c at 258.747 kb on + strand, within Rv0215c at 258.751 kb on + strand at 258.751 kb on + strand at 258.751 kb on + strand at 258.752 kb on - strand at 258.752 kb on - strand at 259.193 kb on - strand, within Rv0216 at 259.924 kb on + strand at 259.935 kb on - strand at 259.974 kb on - strand at 260.050 kb on - strand, within Rv0217c at 260.157 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.210 kb on - strand, within Rv0217c at 260.255 kb on - strand, within Rv0217c at 260.302 kb on + strand, within Rv0217c at 260.455 kb on + strand, within Rv0217c at 260.584 kb on - strand, within Rv0217c at 260.702 kb on + strand, within Rv0217c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.45 ug/mL remove 257,926 - Rv0215c 0.13 -0.3 257,991 + Rv0215c 0.19 +0.3 257,992 - Rv0215c 0.19 -0.4 258,531 + Rv0215c 0.70 -0.2 258,532 - Rv0215c 0.70 +0.1 258,532 - Rv0215c 0.70 +2.7 258,532 - Rv0215c 0.70 -0.2 258,651 + Rv0215c 0.81 -0.5 258,681 + Rv0215c 0.84 +0.0 258,747 + Rv0215c 0.90 +0.1 258,751 + +0.1 258,751 + -0.0 258,751 + +1.7 258,752 - +1.1 258,752 - -0.2 259,193 - Rv0216 0.28 +0.2 259,924 + -1.7 259,935 - +0.1 259,974 - +0.1 260,050 - Rv0217c 0.14 +0.0 260,157 + Rv0217c 0.26 -0.0 260,209 + Rv0217c 0.31 +1.1 260,209 + Rv0217c 0.31 -0.4 260,209 + Rv0217c 0.31 -1.1 260,210 - Rv0217c 0.32 -1.1 260,255 - Rv0217c 0.37 +0.3 260,302 + Rv0217c 0.42 -0.1 260,455 + Rv0217c 0.59 -0.1 260,584 - Rv0217c 0.73 -1.1 260,702 + Rv0217c 0.86 -0.7
Or see this region's nucleotide sequence